Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0040 ATGGGGGATGATGAGAAGAAGATCGGTGGAGAGGGGGAGATAGTGAAGGTGGAGCCAAAACCCAGCAATGGTTTCACCTCAAAAGTGATTGATTTGTTGGAGAAGCTGGTGGTGAAGTGTTTGTATGATTCTTCACTGCCCCATCACTACCTCACTGGTAATTTTGCTCCTGTTCCTGAGACCCCTCCCATTAAGGACCTGCCTGTCAAAGGGTACCTACCGGATTGCTTGAATGGGGAGTTTGTCAGGGTCGGACCTAATCCGAAGTTTGCTCCTGTAGCTGGATATCACTgGTTTGATGGAGATGGAATGATTCATGGTTTGCGTATCAAAGATGGAAAAGCTACATATGTTTCCCGTTTTGTGAAAACTTCTCGTCTTAAACAAGAAGAATACTTTGAAGGGTCCAAATTTATGAAGATTGGAGATCTCAAGGGTCTATTTGGACTTTTAATGGTTAACATACATATGCTGAGAACTAAATGGAAAGTACTGGATGCTTCTTTTGGAATTGGAACAGCTAATACTGCTCTTGTATATCACCACGGGAAACTTCTGGCACTCTCAGAAGCAGATAAACCCTATGCTATTAAAGTTTTTGAAGATGGTGATTTGCAGACACTTGGCATGCTAGATTATGACAAGAGATTGGGCCACTCCTTCACTGCTCATCCAAAAGTTGACCCATTTACTGGGGAGATGTTTACATTTGGCTATTCACATACACCACCGTATATCACATACAGAGTAATTTCAAAAGATGGTTATATGCATGATCCTGTACCCATAACAGTATCAGATCCCATCATGATGCACGACTTTGCGATCACAGAGAATTATGCCATATTTATGGATCTTCCTTTGTATTTTAGGCCAAAGGAAATGGTGAAGAATAAGACTCTGATATTCTCATTTGATCCAACCAAGAAAGCTCGGTTTGGTGTGCTACCTCGATATGCTAAGGATGAAAAGCATATTAGATGGTTTGAACTACCAAACTGCTTCATATTCCACAATGccAATGCTTGGGAGGAGGAAGATGAAGTTGTTCTGATCACATGTCGCATTCAGAATCCAAATTTGGACATGGTCAGCGGGGCAGTCAAGGAAAAGCTTGAAAATTTCTCAAATGAGCTGTATGAAATGAGATTTAACATGAAAACCGGCGAAGCTTCTCAAAAGAAACTATCAGCATCTGCAGTAGATTTTCCTAGGGTGAATGAAAGCTACACTGGCAGGAAGCAGCGATATGTATATGGAACCACGTTAGACAGCATTGCAAAAGTTACTGggattattaaatttgatttgcatGCCGAACCGGATCATGCAAAAACAAAGCTTGAAGTTGGAGGAAATGTTCAGGGTCTCTATGACTTGGGACCCGGGAAGTTTGGCTCGGAAGCTATTTATGTCCCGCGTGTCCCTGGCACCTGA 1437 0.4154 MGDDEKKIGGEGEIVKVEPKPSNGFTSKVIDLLEKLVVKCLYDSSLPHHYLTGNFAPVPETPPIKDLPVKGYLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVKTSRLKQEEYFEGSKFMKIGDLKGLFGLLMVNIHMLRTKWKVLDASFGIGTANTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGMLDYDKRLGHSFTAHPKVDPFTGEMFTFGYSHTPPYITYRVISKDGYMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKNKTLIFSFDPTKKARFGVLPRYAKDEKHIRWFELPNCFIFHNANAWEEEDEVVLITCRIQNPNLDMVSGAVKEKLENFSNELYEMRFNMKTGEASQKKLSASAVDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDHAKTKLEVGGNVQGLYDLGPGKFGSEAIYVPRVPGT 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0040 478 PANTHER BETA-CAROTENE DIOXYGENASE 4 478 IPR004294 GO:0016702
Ssu2g0040 478 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 1-3 4 478 - -
Ssu2g0040 478 Pfam Retinal pigment epithelial membrane protein 55 475 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0040 Ssu-Chr2 2638058 2643252 Dispersed