Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0039 ATGCACATCAAGGAGATTTGTCTGGAAGGGTTCAAGTCCTACGCGACCCGCACCGTGGTTCCGGGCTTCGACCCCTTCTTCAACGCCATCACCGGCCTCAACGGTTCCGGCAAATCGAACATTCTCGACTCCATCTGCTTCGTCCTTGGCATCACCAACTTGCAGCAGGTTAGGGCTTCCAACCTTCAGGAACTCGTCTACAAACAGGGCCAAGCCGGAATCACCAAAGCCACCGTCTCCATCGTCTTCGATAACTTCGATAGGTCGCGAAGCCCTCTCGGATACGAAGGCCATTCGGAGATCACAGTAACAAGACAGATTGTGGTTGGGGGGAGGAACAAATATTTGATCAATGGGAAGCTTGCACAGCCTAGTCAAGTTCAGAACCTTTTTCATTCAGTGCAGCTAAATGTTAATAATCCACATTTCCTTATAATGCAAGGGCGCATCACCAAGGTTTTGAATATGAAACCGCCGGAGATATTGTCTATGCTTGAGGAAGCTGCGGGGACAAGAATGTACGAGACAAAGAAAGAGGCTGCTCTAAAAACACTTGAGAAGAAACAGAGTAAGGTTGATGAGATTAACAAGCTTCTTGACCAGGAGATACTGCCTGCTCTGGAGAAGTTAAGGAAAGAAAAGACACAGTACATGCAATGGGCTAATGGCAATGCTGAGTTGGATAGGCTGAGAAGATTTTGCATTGCTTATGAGTATGTTCAAGCGGAGAGGATTAAAGACAATGCTGTTTCTGAGGTGGAAGAAGTGAAAGCCAAGATAGCTGAGATTGATGATGTTGCTAAGACAAATCAGGTGGAAATAAAGGAAATGGAGGCCAAAATAGTTCAGTTGACTGCTGAAAAGGAAGCAAGCATGGGTGGAGAAATGAAATCTCTGTCAGAGAAGGTAGATGCACTTTCCCAGAATCTTGTGAGGGAGATGTCTGtactaaataataaagaagacACTTTGAGGAGTGAAGAAGCCAACAAAGCAAATattgttaaaaatattgaagaatTGAAGCAATCTGTAGAAGAGAAGGCCTCTGCTGTTAAAAAGGCTGAAGAGGGGGCGGCAGATCTTAAAAATAGAGTTGATGAGCTTACAAAGAGTCTAGAGGAGCATGAAAAAGAATACCAGGGTGTTTTAGCTGGCAAGAGCAGTGGCAATGAGGAGAAATGCTTAGAGGATCAACTAAGGGATGCAAAAGTAGCAGTTGGGAGTGCTGAAACAGAATTGAAACAGCTGAAAGCCAAAATTAGCCATTGTGAAAAGGAACTGAAGGAGAAAACAAATCAATTAAGGTCAAAATATGAAGAAGCTAATGCTGTGGAAAATGAACTCAACACTAGGCAAATAGATGTGGAGAATGTTAGAATGGAGTTGGAGTCTCTTTCTTATAAAGAGGGTGAGATGGAAGCTTTACAAAAGGAGCGTATGACTGAGATGGATTGTGTGCAAAAGTGGAAGGATGAAATACGCAATATTTCAGCATACTTGGCAAATGTCGATTTTACATACCATGATCCTGTCAAGAACTTTGATAGGTCAAAGGTGAAAGGTGTTGTTGCAAAACTCTTCAAAGTAAAGGATAGGTCCACAATGACTGCCCTTGAGGTTGCAGCTGGTGGAAAGTTGTATAATGTTGTTGTTGACACAGAAAATACTGGAAAGCAACTACTACAGAATGGCAATCTTAAAAGGAGAGTGACAATTGTACCCctgaacaaaataaaatccgATACTGTTCCCTCCAGAGTTCAACAAGCTGCTGATAGATTGGTGGGCAAGGGCAATGCTGTAGTAGCTCTTTCTTTGattgattataaaaagaattggAGTGCAATGGAATATGTATTTGGTTCAACCTTTGTTTGCAAAACCATTCATGTTGCAAAGGAGGTAGCATTTAATCCTCAGATTCACACCACAAGCGTCACTCTTGAAGGAGATATATTTCAGCCAAGTGGTCTTGTGACTGGTGGAAGCCGGAAGGGAAGTGGTGATCTTTTGGGGCAACTTCATGCTTTGGCTGAGGCTGAATCAAAACTTTCAGTGCATCAAAGAAGGTTGTCAGAGATTGAGGCAAAGATCTCAAAGCTCCTTCCAATTCAGAAAAGATATACAGATCTCAAAGCACAATTAGAACTGAAGTTGTATGACCTTTCGTTGTTTCAGAGCAGAGCTGAGCAAAATGAGCATCATAAGCTTGGAGAATTAGTGAAGAAGATTGAGCAAGAGCTTAATGAAGCAAAATCTACAGTTAAGGACAAGCAAATTTTATATGAGGACTGCATCAAAACTGTTTCATCTCTTGAGAAATCAATCAAAGAACATGGCAATAACAGAGAGAGTAGACTAAAAGGCTTggagaaaaagataaagtcaATCAAATCTCAAATGCAGTCATCTTTAAAAGATCTGAAGGGACATGATAGTGAAAAGGAGAGGCTTGTAATGGAATTGGAAGCTGTTATTGAGGAGCAAGCATCCTTGGAAAATCAGTTAGCATCATTGGGAACAGTTATTAGTAATCTTGCCTCTGAAGTAGAAGAACAAAGATCCACAGTTGTTGCTGCACGGAATAATCTTGATCAAGTTCAGTCACAGCTGAAATCAGTTCGCCTGAAAATTAAGGAATGTGATAAGGAAATCAGTGGTATTATTAAAGAGCAGCAAAAGCTTGAACATAAAATTAGTGAGAGTAATCTTGAAAGGAAGAGGATGGAAAATGAGGTAAAACGGATGGAGATGGAACAGAAAGACTGTTCTATGAGAGTAGATAAATTAATAGAGAAGCACGCATGGATTGCTTCTGAAAAACAGTTGTTCGGTAGAAGTGGGACTGATTATGATTTTTCGTCTCGTGATCCTAGTAAAGCAAGGGAAGAACTTGAGAAGTTTCAGGCTGAACAATCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTAATGGCAATGTTTGAGAAGGCAGAAGATGAATACAATGATTTGATGTCCAAAAAAAACATCATTGAGAATGACAAATCTAAAATCAAGAAGGTGATTGAAGAGCTAGatgagaagaagaaggagacaCTAAATGTTACCTGGATCAAAGTGAATAaTGACTTTGGATCCATCTTTTCTACGCTACTACCGGGAACAATGGCCAAGTTAGAACCTCCAGAAGGATGCAACTTCCTTGATGGTCTTGAGGTTCGTGTTGCATTTGGAGGTGTGTGGAAGCAGTCATTGTCTGAATTAAGTGGAGGTCAGCGATCACTGCTTGCACTTTCTCTGATTCTCGCACTGCTTCTGTTCAAACCTGCTCCACTGTACATCCTTGATGAGGTTGATGCAGCTCTTGATTTGAGCCATACACAAAACATAGGGAGAATGATAAAGGCCCACTTTCCACACTCTCAGTTTATTGTGGTTTCACTGAAGGAAGGCATGTTCAATAACGCAAATGTTCTTTTCCGGACAAAATTTGTGGATGGTGTTTCAACTGTTCAGCGAACTGTTGCAGCTAAACAAAGGAAGTGA 3528 0.4031 MHIKEICLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNFDRSRSPLGYEGHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKEKTQYMQWANGNAELDRLRRFCIAYEYVQAERIKDNAVSEVEEVKAKIAEIDDVAKTNQVEIKEMEAKIVQLTAEKEASMGGEMKSLSEKVDALSQNLVREMSVLNNKEDTLRSEEANKANIVKNIEELKQSVEEKASAVKKAEEGAADLKNRVDELTKSLEEHEKEYQGVLAGKSSGNEEKCLEDQLRDAKVAVGSAETELKQLKAKISHCEKELKEKTNQLRSKYEEANAVENELNTRQIDVENVRMELESLSYKEGEMEALQKERMTEMDCVQKWKDEIRNISAYLANVDFTYHDPVKNFDRSKVKGVVAKLFKVKDRSTMTALEVAAGGKLYNVVVDTENTGKQLLQNGNLKRRVTIVPLNKIKSDTVPSRVQQAADRLVGKGNAVVALSLIDYKKNWSAMEYVFGSTFVCKTIHVAKEVAFNPQIHTTSVTLEGDIFQPSGLVTGGSRKGSGDLLGQLHALAEAESKLSVHQRRLSEIEAKISKLLPIQKRYTDLKAQLELKLYDLSLFQSRAEQNEHHKLGELVKKIEQELNEAKSTVKDKQILYEDCIKTVSSLEKSIKEHGNNRESRLKGLEKKIKSIKSQMQSSLKDLKGHDSEKERLVMELEAVIEEQASLENQLASLGTVISNLASEVEEQRSTVVAARNNLDQVQSQLKSVRLKIKECDKEISGIIKEQQKLEHKISESNLERKRMENEVKRMEMEQKDCSMRVDKLIEKHAWIASEKQLFGRSGTDYDFSSRDPSKAREELEKFQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWIKVNNDFGSIFSTLLPGTMAKLEPPEGCNFLDGLEVRVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAAKQRK 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0039 1175 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 1 1171 - -
Ssu2g0039 1175 Gene3D - 803 991 - -
Ssu2g0039 1175 Coils Coil 178 198 - -
Ssu2g0039 1175 Gene3D - 518 676 - -
Ssu2g0039 1175 Coils Coil 400 448 - -
Ssu2g0039 1175 Coils Coil 788 808 - -
Ssu2g0039 1175 Coils Coil 239 259 - -
Ssu2g0039 1175 SMART SMC_hinge_2 518 637 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Ssu2g0039 1175 Gene3D - 577 666 - -
Ssu2g0039 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1151 IPR027417 -
Ssu2g0039 1175 Pfam SMC proteins Flexible Hinge Domain 518 637 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Ssu2g0039 1175 Coils Coil 317 379 - -
Ssu2g0039 1175 PIRSF SMC 1 1154 IPR024704 GO:0005524|GO:0016887
Ssu2g0039 1175 SUPERFAMILY Smc hinge domain 485 685 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Ssu2g0039 1175 Coils Coil 981 1025 - -
Ssu2g0039 1175 Coils Coil 844 885 - -
Ssu2g0039 1175 Coils Coil 735 762 - -
Ssu2g0039 1175 Coils Coil 816 836 - -
Ssu2g0039 1175 Coils Coil 267 287 - -
Ssu2g0039 1175 Coils Coil 893 927 - -
Ssu2g0039 1175 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2-2 1 1171 - -
Ssu2g0039 1175 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Ssu2g0039 1175 Gene3D - 994 1174 IPR027417 -
Ssu2g0039 1175 Pfam RecF/RecN/SMC N terminal domain 2 1160 IPR003395 -
Ssu2g0039 1175 Gene3D - 1 202 IPR027417 -
Ssu2g0039 1175 Coils Coil 678 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0039 Ssu-Chr2 2596556 2609536 Dispersed