Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0029 ATGGTGGAGCACAGCAGCGCCGCCGTCAACGACGGCAAACCAGAACTGCAACAAAACCAACACAATCACCATAACAACGACAACAACAAGAAGAGTACATCCGATCCAGAGCTGTTCTGCTGTTTGCTGCAGCCAGCCACCGCCGCCGGCGATCCCGAGTACATCGGCATTCGCCGCCTCCTCCTTTATCGGAAGGCCGAGGCCAGAGTTCTCCGCCGCAGAGATTGGAGATGCAATGGAAAAACTTATGTGGCATACCGGAATTACATATGTAGGCCTAGGAACTGGGAAAGGGAAAGTTTACGTGCCCCAAGCCTCCAGAGTACTCCAGGAAACAGTGGCCGATGGTTTCCATCTCCAAGTCCACACTCCCGTTGGTCTGAGGTGGACAGCTGGAGTTCTGGGCGGGATCTGCAAAATGCAAATCCAGTATATAATCATAGAACAAGTTTTGGCTCAAGTGCAAGTGATTCTGATCGTCCTAGACATCGTGGGGTTGAGCCTGCCTATTCTTTTGTTGGAATGCATTGCATCTTTGATCAGTGCAAAGCCTCTGTTACGGTTTTGAAGTTTGGACACATGAGTTCTGATTTACTTGCTTATGGGGCATCAGACGGAACCTTGACTGTGTGCAGTGTATCTGAGAAACCTTCAGTCATCAAGCAATTAGATGGCCATTCCAAAGATGTCACAGATTTTGATTTTACATCGAACAATCAATACATTGCATCGTCTTCATTGGATAAAACTGTGAGAGTATGGGAGATAGCAAAAGGTATTTGCATACGGGTGATATATGGAGTCTCTTCACAATTGTGTATCCGTTTTCACCCTGTAAGTATAAATGGGGTGTGTTTGTGA 861 0.4715 MVEHSSAAVNDGKPELQQNQHNHHNNDNNKKSTSDPELFCCLLQPATAAGDPEYIGIRRLLLYRKAEARVLRRRDWRCNGKTYVAYRNYICRPRNWERESLRAPSLQSTPGNSGRWFPSPSPHSRWSEVDSWSSGRDLQNANPVYNHRTSFGSSASDSDRPRHRGVEPAYSFVGMHCIFDQCKASVTVLKFGHMSSDLLAYGASDGTLTVCSVSEKPSVIKQLDGHSKDVTDFDFTSNNQYIASSSLDKTVRVWEIAKGICIRVIYGVSSQLCIRFHPVSINGVCL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0029 286 ProSitePatterns Trp-Asp (WD) repeats signature. 242 256 IPR019775 -
Ssu2g0029 286 MobiDBLite consensus disorder prediction 101 121 - -
Ssu2g0029 286 SUPERFAMILY WD40 repeat-like 186 278 IPR036322 GO:0005515
Ssu2g0029 286 MobiDBLite consensus disorder prediction 17 31 - -
Ssu2g0029 286 PANTHER WD REPEAT PROTEIN 26-RELATED 21 282 - -
Ssu2g0029 286 PANTHER WD REPEAT-CONTAINING PROTEIN 13 21 282 - -
Ssu2g0029 286 Gene3D - 175 286 IPR015943 GO:0005515
Ssu2g0029 286 MobiDBLite consensus disorder prediction 1 32 - -
Ssu2g0029 286 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 256 - -
Ssu2g0029 286 SMART WD40_4 172 212 IPR001680 GO:0005515
Ssu2g0029 286 SMART WD40_4 216 255 IPR001680 GO:0005515
Ssu2g0029 286 Pfam WD domain, G-beta repeat 220 254 IPR001680 GO:0005515
Ssu2g0029 286 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 264 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0029 Ssu-Chr2 1707057 1711388 Transposed