Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0004 ATGAGCAATGATGATAGCAGTGCCACTGAGGAAGATGTTGAGCTTGTTGACAAACGATCTGGTCGTGAAGATGATAGTGATACAGACTACTCTAGTACCATGGAGGAAGAAGGTGCTGCTCCTGAAGATAATTTTGATAAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAACTTGCTTACATCCTCCTGCAAAGGAACATCTGTAAACAGTGATTCTATGTTGTCCATGGAAAACAACGATCCGAAATCCAATGAAGTTGTTGAAGATGCAGATGGAAAAGTATCTAATGAGTCTGAAAAGGTTTCAGGTGTTTCGAAGCTGGAAAATTCCAGCAGAAGCAACTCATCAAATCCTAAGGGAACAGAAGAAGTTGATTTGCAGAGAacagtttttataaataatcttCCCTTTGAATGTGATAATGAAGAAGTAAAGCAACGATTTTCTGGATTTGGGGAAATAGAATACTTTGTTCCTGTTCTCCACCAAGTTACCAAGCGACCGAGAGGGACaggttttctaaaatttaagacTGTGGAAGCAGCTAATATTGCAATTTCAACTGCCAGTGCTGCTTCTGGGACAGGTATTTTACTGAAAGGTAGaccattaaaagttttaaaggcTTTGGATAAGAAATCAGCACATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTCATGACCATCGCAATCTTTACTTGTCAAAGGAGGGACTTATTCTTGAGGGAACTACAGCTGCTGAAGGGGTTTCAGCTGGTGATATGTTAAAACGCCAAGAGttggaaaggaaaaagaagacaaaGCTTCAATCTCCAAATTTTCATGTTTCAAGAACTAGACTTATTATCTACAACTTACCCAAGTCAATGAATGAGAAAGAACTCAAGAAGCTTTGCATAGATGCAGTCATCTCTAGAGCTACGAAGCAAAAACCGGTTATTCGGCAGATAAAGTTTTTGAAAgatgaaaggaaaggaaaggttGCTCAAGAACGCCATTCACGAGGAGTTGCCTTTGTTGAGTTTTCGGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAATAATCCTGAAACATTTGGCCCCGAACATCGGCCAATCGTGGAGTTTGCTCTTGATAATGTTCAAACACTTAAACTTCGGAAGGCAAAGCTACAATCTCAGCAGCAGGCTCCTCAAGTTGACAACAATGCCATGGAAAATGGCAAGCCTGACACAGTAGAAGTTCGCACAAGTGTAAAGGACAGAAAACGAAAATCTCAAGAGCATGACCAACCAGCAAGGGACTCAGTACTGAATACAAATGGTGAATCAGGGGGTACGTTGGCAAATGGAAAATCCCCTCAAGGACATAAATCCAAAAGACAGAAAGGCAACAATAAGAGCAAAAAGGCACCGAGAGAAAATCCAGAAGCCTTGTCCATGAAGTCAAAGAATAACCAAGATGACCAGAACAATGGTGATGCATCACTTGATGGTCAAAACACTGCCACCGacactaaaagaagaaaatcagGAAACAAAGATGATGTGGGGTTTAGAAAAAGGAAGATGCAAAACCAAGATCAAGCAGGCCAAAAGGTTTCTAAGAAACGGCCTAAGAAGAATAAAGATTCAGTAGGGAAGGACGTAGTAGACAAGCTTGACATGCTTATAGAACAATACAGATCCAAGTTCTCACACAAGGGTTCCCAAGAGAGTGATGGAGGGAAAAAACCTTCAAAACAGCTTAGAAAATGGTTCCAATCATAG 1764 0.3866 MSNDDSSATEEDVELVDKRSGREDDSDTDYSSTMEEEGAAPEDNFDKEADIARKVLNNLLTSSCKGTSVNSDSMLSMENNDPKSNEVVEDADGKVSNESEKVSGVSKLENSSRSNSSNPKGTEEVDLQRTVFINNLPFECDNEEVKQRFSGFGEIEYFVPVLHQVTKRPRGTGFLKFKTVEAANIAISTASAASGTGILLKGRPLKVLKALDKKSAHDKELEKAKNEVHDHRNLYLSKEGLILEGTTAAEGVSAGDMLKRQELERKKKTKLQSPNFHVSRTRLIIYNLPKSMNEKELKKLCIDAVISRATKQKPVIRQIKFLKDERKGKVAQERHSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQSQQQAPQVDNNAMENGKPDTVEVRTSVKDRKRKSQEHDQPARDSVLNTNGESGGTLANGKSPQGHKSKRQKGNNKSKKAPRENPEALSMKSKNNQDDQNNGDASLDGQNTATDTKRRKSGNKDDVGFRKRKMQNQDQAGQKVSKKRPKKNKDSVGKDVVDKLDMLIEQYRSKFSHKGSQESDGGKKPSKQLRKWFQS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0004 587 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 212 IPR000504 GO:0003723
Ssu2g0004 587 MobiDBLite consensus disorder prediction 12 28 - -
Ssu2g0004 587 MobiDBLite consensus disorder prediction 477 500 - -
Ssu2g0004 587 MobiDBLite consensus disorder prediction 1 47 - -
Ssu2g0004 587 CDD RRM3_RBM28_like 129 210 - -
Ssu2g0004 587 CDD RRM4_RBM28_like 281 378 - -
Ssu2g0004 587 PANTHER RNA-BINDING PROTEIN 28 16 518 - -
Ssu2g0004 587 Gene3D - 280 375 IPR012677 -
Ssu2g0004 587 MobiDBLite consensus disorder prediction 387 404 - -
Ssu2g0004 587 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 389 IPR000504 GO:0003723
Ssu2g0004 587 MobiDBLite consensus disorder prediction 387 587 - -
Ssu2g0004 587 MobiDBLite consensus disorder prediction 501 525 - -
Ssu2g0004 587 SUPERFAMILY RNA-binding domain, RBD 272 380 IPR035979 GO:0003676
Ssu2g0004 587 Coils Coil 372 392 - -
Ssu2g0004 587 MobiDBLite consensus disorder prediction 99 124 - -
Ssu2g0004 587 MobiDBLite consensus disorder prediction 411 430 - -
Ssu2g0004 587 SMART rrm1_1 130 208 IPR000504 GO:0003723
Ssu2g0004 587 SMART rrm1_1 282 373 IPR000504 GO:0003723
Ssu2g0004 587 MobiDBLite consensus disorder prediction 62 82 - -
Ssu2g0004 587 MobiDBLite consensus disorder prediction 431 453 - -
Ssu2g0004 587 MobiDBLite consensus disorder prediction 62 125 - -
Ssu2g0004 587 Gene3D - 65 226 IPR012677 -
Ssu2g0004 587 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 189 IPR000504 GO:0003723
Ssu2g0004 587 MobiDBLite consensus disorder prediction 83 97 - -
Ssu2g0004 587 Coils Coil 207 234 - -
Ssu2g0004 587 SUPERFAMILY RNA-binding domain, RBD 129 300 IPR035979 GO:0003676
Ssu2g0004 587 PANTHER RNA-BINDING MOTIF PROTEIN 14B 16 518 - -
Ssu2g0004 587 MobiDBLite consensus disorder prediction 540 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0004 Ssu-Chr2 696927 699690 Dispersed