Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0002 ATGAAGGGGAAGGGGGCTTGGCAACGGTGGCGCTCCGGCGATATGAACCTCCGAAAACTAGGGGATGTCAGTCTCTGGCGAGAACAATGGCGAGAGGTTGCAAGAGAGTTGATTGGAGCAAGGTCAGAGTCAGTGATGGTGCTTGATGGATTACGAAAAACTATGCTACACCTCTGTGTTGAACACAATCATTTAGAGACCCTGAAAACGTTGGTGCAAGTGGGAGATGTCAGTGATGATTTTCTAAACTTTGGAGACTTTTATCGTGGAAATACCATTCTTCATCTAGCTGTTATGTTGAAGCAAATTGAGACTGTAAGGTACTTGCTTTCTGTATCCAAAATAAGAGAAGAAGCGAACATTGAGAACAAGATGGGCTATACTGCTGTGGACATGCTAGAGCACGATCCAAAAGACTTGAGAAGTCTTCAAATACAACTCATGTTGATGGATGCTGGCATCAAGAACAATGAAAAGAACCAAtgcaataaatataataaaaatcatatactcCTTCATCTACAAATCACCGCCGCGACGCAACTCCGCGCCCGCGTTCTCCGTGATTCCCGGCTTGAGGCGGTCGCCGCTGTCACGGCGTTCTCCGTCAAACTTTCCCTGACACGCTTTGCCAACGGCGTTCTCCGTCACGACGTGAAGGGACCTCAGTACTGCAATCTAGTGTTGGCATCCTCCCAAAATCATCCTCGTCGCCGCTGCGGTGCAGATCTGCGAAACCATATTACTAAATCGCCGCACCGTCCACCATTGTCGCGACGCCAAACCAGATCCTCGCACCACAGTCGCGCTTGTTATTCGCGTCGGTGTTCTCATGCGAGGTCTCTCAACCCGTTCTGCCACCACCACGATGCGAAGCCGGCGTCGATTTCCTTAAGCATCACCGCCTCCGCGCCTCTGCCTCACGCGTCACGGGCGCGCCTTCGAGCTTTCAATTCGCGCCGCTGGATGACGCTGTGTTGGAAACAAGAACGTGCAGGGCGCAATGGAAGCTTCCGGAAAGAAAGAAAGGCTTTGCCTCTTTTGGGCTGGAACCCTACCCTTTCCTTCGGTGTATCGGATGGGCTTGTCCCAATCTTTGATACGCATGGTTTGTGGGTTTCTTCCTTGGGTGGATGCGCGATTGACACAGTTGGGCCCAATTCCgttttctcatttttgattACTGCTGATGTGCGAAAATGGGTTAAGTCCAGTTTGAGTtgcaattttttagaattattaatttaa 1248 0.4824 MKGKGAWQRWRSGDMNLRKLGDVSLWREQWREVARELIGARSESVMVLDGLRKTMLHLCVEHNHLETLKTLVQVGDVSDDFLNFGDFYRGNTILHLAVMLKQIETVRYLLSVSKIREEANIENKMGYTAVDMLEHDPKDLRSLQIQLMLMDAGIKNNEKNQCNKYNKNHILLHLQITAATQLRARVLRDSRLEAVAAVTAFSVKLSLTRFANGVLRHDVKGPQYCNLVLASSQNHPRRRCGADLRNHITKSPHRPPLSRRQTRSSHHSRACYSRRCSHARSLNPFCHHHDAKPASISLSITASAPLPHASRARLRAFNSRRWMTLCWKQERAGRNGSFRKERKALPLLGWNPTLSFGVSDGLVPIFDTHGLWVSSLGGCAIDTVGPNSVFSFLITADVRKWVKSSLSCNFLELLI 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0002 415 ProSiteProfiles Ankyrin repeat region circular profile. 89 111 - -
Ssu2g0002 415 ProSiteProfiles Ankyrin repeat profile. 89 111 IPR002110 GO:0005515
Ssu2g0002 415 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 32 192 - -
Ssu2g0002 415 MobiDBLite consensus disorder prediction 248 269 - -
Ssu2g0002 415 SMART ANK_2a 89 118 IPR002110 GO:0005515
Ssu2g0002 415 SMART ANK_2a 51 79 IPR002110 GO:0005515
Ssu2g0002 415 PANTHER CASKIN 32 192 - -
Ssu2g0002 415 SUPERFAMILY Ankyrin repeat 43 132 IPR036770 -
Ssu2g0002 415 MobiDBLite consensus disorder prediction 252 269 - -
Ssu2g0002 415 Pfam Ankyrin repeats (3 copies) 34 111 IPR002110 GO:0005515
Ssu2g0002 415 Gene3D - 22 140 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0002 Ssu-Chr2 22834 33996 Dispersed