Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4157 ATGTCTTTCAGAGAAAAGGAGATGCAAAGGGCGACGCAAGGCCAAGAAGTAGTATTAAGGGGTTCAAAGTGCCAAGACTGTGGGAACCTAGCCAAGAAGGAATGTTCACACTCAAGGTGCAGGACTTGCTGCAAGAACAGAGGGTTTGAGTGCCAAACCCATATCAAGAGCACTTGGATTCCTGTGAATAGGAGGCGCCACAAGGAGCCACACCCATCTCCGCACCACTTTCACGCAGATATTCCTGAAAAGCACAATCAGATCAACCCATATTCAGGTTTAGAGTTGAAATTTCCAGATGCTACGAATTCCATGGGTATGTTTCGGTGCGTTCAGGTTCGTTCTATGGATGCTGCGGTAAATGAAATAGCGTATCAAACATCTGTGAACATTGGAGGACATGTATTCAGTGGACTACTGTATGATCAAGGCCCTGACCAAagctataataataatgatgagagTTCCATGGGCCTTGTTGATCAGCAGCAGAATCTCGGTCTTATGAATAATTCTTCATTCCACACTAGAGATAATAATAGTGGTGCAATTATGGCCTCTGCTGGTTACGATGAGCCTCTTTTAACTCCAACACCACCGTATCCGTTCCCCTTTGCTCCCTTCAGGCCCGGTATGCCATATTTCACATACCCAAGatcttaa 663 0.4404 MSFREKEMQRATQGQEVVLRGSKCQDCGNLAKKECSHSRCRTCCKNRGFECQTHIKSTWIPVNRRRHKEPHPSPHHFHADIPEKHNQINPYSGLELKFPDATNSMGMFRCVQVRSMDAAVNEIAYQTSVNIGGHVFSGLLYDQGPDQSYNNNDESSMGLVDQQQNLGLMNNSSFHTRDNNSGAIMASAGYDEPLLTPTPPYPFPFAPFRPGMPYFTYPRS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4157 220 Pfam Domain of unknown function (DUF702) 21 146 - -
Ssu1g4157 220 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 97 145 IPR006511 -
Ssu1g4157 220 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 23 65 IPR006510 -
Ssu1g4157 220 PANTHER BNAC01G23660D PROTEIN 6 195 - -
Ssu1g4157 220 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 6 195 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4157 Ssu-Chr1 101174065 101175010 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ssu1g4157 DUF702 9.7e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0094 5 2052141 2053612 Ssu1g4157 1 101174065 101175010 PCT