Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4091 ATGGCTGTCTCCTCCTCATCCAAGGCACTTGTCCTTGCCTGCTCCTTCTGCCTATTTGCGTCTTTGGCGTTTGGACGCGATTTCTCCATTGTGGGCTATTCATCGGAGGACTTAAAGTCCATGGATAAGCTCATTGAACTCTTTGAATCGTGGATGTCAAAACACGGCAAGATTTACGAGAGCATTGAGGAGAAGCTGCTTAGGTTCGAGATCTTCAAGGACAACCTAAAGCACATAGATGAGAGAAACAAGGTGGTCAGCAACTACTGGCTTGGGTTGAATGAGTTTGCTGATTTGACCCACCAAGAGTTCAAGAAGAAGTACCTGGGCCTTAAGGTTGACCACTCTAGAAGGAGAGAGTCCCCAGAGGAATTCACTTACAAAGATGTTGAATTGCCAAAGTCAGTGGACTGGAGAAAGAAAGGTGCTGTAACCCAAGTCAAGAATCAAGGTTCATGTGGTAGCTGCTGGGCATTTTCCACTGTTGCAGCGGTTGAGGGAATAAACCAGATTGTGACGGGAAATTTGACATCATTGTCTGAGCAAGAGTTGATTGACTGTGACAGAACTTACAACAATGGTTGCAATGGGGGTCTCATGGACTATGCATTCTCCTTTATAGCAGAAAACGGTGGACTCCATAGAGAGGAAGATTATCCTTACATTATGGAGGAAGGTACTTGCGAGATGACAAAGGAACAAACCGAAGTTGTCACTATTAGCGGGTACCATGACGTGCCACAAAACAATGAACAGAGCCTATTGAAGGCACTTGCAAACCAACCCCTCAGCGTGGCCATAGAGGCTTCAGGCAGAGATTTCCAATTTTATAGCGGGGGTGTTTTCGATGGGCACTGCGGAAGTGACCTAGATCACGGTGTGGCAGCTATTGGGTATGGGACTTCGAAAGGCGTGGATTATATCATAGTGAAAAATTCATGGGGATCTAAGTGGGGAGAGAAAGGATACATAAGGATGAGGAGAAACATCGGAAAGCCCGAGGGAATATGCGGAATCTATAAGATGGCTTCTTATCCCACTAAGAAGAAATAA 1053 0.4568 MAVSSSSKALVLACSFCLFASLAFGRDFSIVGYSSEDLKSMDKLIELFESWMSKHGKIYESIEEKLLRFEIFKDNLKHIDERNKVVSNYWLGLNEFADLTHQEFKKKYLGLKVDHSRRRESPEEFTYKDVELPKSVDWRKKGAVTQVKNQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELIDCDRTYNNGCNGGLMDYAFSFIAENGGLHREEDYPYIMEEGTCEMTKEQTEVVTISGYHDVPQNNEQSLLKALANQPLSVAIEASGRDFQFYSGGVFDGHCGSDLDHGVAAIGYGTSKGVDYIIVKNSWGSKWGEKGYIRMRRNIGKPEGICGIYKMASYPTKKK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4091 350 PANTHER - 25 348 - -
Ssu1g4091 350 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 290 300 IPR025660 -
Ssu1g4091 350 Pfam Cathepsin propeptide inhibitor domain (I29) 48 104 IPR013201 -
Ssu1g4091 350 PRINTS Papain cysteine protease (C1) family signature 150 165 IPR000668 GO:0006508|GO:0008234
Ssu1g4091 350 PRINTS Papain cysteine protease (C1) family signature 307 313 IPR000668 GO:0006508|GO:0008234
Ssu1g4091 350 PRINTS Papain cysteine protease (C1) family signature 292 302 IPR000668 GO:0006508|GO:0008234
Ssu1g4091 350 Pfam Papain family cysteine protease 132 347 IPR000668 GO:0006508|GO:0008234
Ssu1g4091 350 Gene3D Cysteine proteinases 27 349 - -
Ssu1g4091 350 CDD Peptidase_C1A 133 346 IPR039417 -
Ssu1g4091 350 SMART pept_c1 132 347 IPR000668 GO:0006508|GO:0008234
Ssu1g4091 350 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 307 326 IPR025661 -
Ssu1g4091 350 SMART Inhibitor_I29_2 48 104 IPR013201 -
Ssu1g4091 350 SUPERFAMILY Cysteine proteinases 43 347 IPR038765 -
Ssu1g4091 350 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 348 - -
Ssu1g4091 350 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 150 161 IPR000169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4091 Ssu-Chr1 100132067 100133575 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0095 5 2075992 2078181 Ssu1g4091 1 100132067 100133575 PCT