Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4003 ATGGCCAAAGTCATGTTTGTTTTGGTCAGCTTCCTCGTATTATGTTGTTTCACAATCAACACTTGCGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACTTTTTATGGAGGTAGCGAAGCCTCGGGGACAATGGGAGGAGCTTGCGGGTATGGGGATCTGTTTTCAACAGGGTATGGAACCAGTACAGCGGCATTAAGTACTGCCTTATTTAACAATGGAGCTTCATGTGGGGAGTGCTACAAAATCATATGCGATTATCAAGCAGACCCCAAATGGTGCTTAAAAGGGACATCCGTAACCATAACTGCTACAAACTTCTGTCCTCCCAATTTTGCCCTGCCCAACAACAATGGAGGGTGGTGCAACCCACCTCTCAAACACTTCGACATGGCTCAACCCGCATGGGAAAAGATTGGCATCTATAAAGGAGGAATCGTGCCCGTGTTATTCCAAAGGGTTCCATGCGCGAAGAAGGGAGGGGTTAGGTTCACTGTGAATGGGAGAGACTACTTTGAGCTTGTATTGATCAGCAACGTGGGAGGGGCTGGATCTATCCAATCTGTGTCCATTAAAGGCTCAAAAACTGGATGGATGACAATGTCAAGAAACTGGGGAGCTAATTGGCAATCCAATGCGTATTTGAATGGTCAATCGTTGTCCTTCAGGGTCACAACCACCGATGGTGTAACTAAACTTTTCCGAGATGTTGTTCCACCAAATTGGGCATTTGGCCAGGCTTTCCCTACTAGTGTCCAGTTTTAA 768 0.4688 MAKVMFVLVSFLVLCCFTINTCAFSPSGWTNAHATFYGGSEASGTMGGACGYGDLFSTGYGTSTAALSTALFNNGASCGECYKIICDYQADPKWCLKGTSVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYKGGIVPVLFQRVPCAKKGGVRFTVNGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMTMSRNWGANWQSNAYLNGQSLSFRVTTTDGVTKLFRDVVPPNWAFGQAFPTSVQF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4003 255 Pfam Lytic transglycolase 64 151 IPR009009 -
Ssu1g4003 255 SUPERFAMILY Barwin-like endoglucanases 28 180 IPR036908 -
Ssu1g4003 255 Gene3D - 162 255 IPR036749 -
Ssu1g4003 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Ssu1g4003 255 SMART dpbb_1 64 152 IPR007112 -
Ssu1g4003 255 PANTHER EXPANSIN 8 255 - -
Ssu1g4003 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Ssu1g4003 255 SUPERFAMILY PHL pollen allergen 159 249 IPR036749 -
Ssu1g4003 255 Gene3D - 15 158 IPR036908 -
Ssu1g4003 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Ssu1g4003 255 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Ssu1g4003 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Ssu1g4003 255 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Ssu1g4003 255 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Ssu1g4003 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Ssu1g4003 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Ssu1g4003 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Ssu1g4003 255 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Ssu1g4003 255 PANTHER EXPANSIN-A15 8 255 IPR002963 GO:0009664
Ssu1g4003 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Ssu1g4003 255 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Ssu1g4003 255 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Ssu1g4003 255 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Ssu1g4003 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Ssu1g4003 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Ssu1g4003 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4003 Ssu-Chr1 98862235 98863555 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0038 5 602860 603831 Ssu1g4003 1 98862235 98863555 PCT