Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4000 ATGGGTGCTGTCTCTTGGCCAGCCTTATCTGAGTCCACCAAGCCCACTGCAAAATTAATGTCTGACTCCTCTGTCAAGACCGACACTGACGATGGATCACTCACCACTAGTCAGGGGCCTGTTATTTCGGAGTCCCCTCAGAAACAAGCTACCAGTAATGCAAAACCCAGTGCTGCAATGAACTATGGTATGACTAATAGACAAAGATCAATGAAGCGTGGAGGGGCCAATGGCAATAATGTTGGGCCTGGTCCAGCTCAGAACAACTTCTCTGGCCCTTCCCTAAATCTTCCACCACCACCGCCGCCACCCTTTCCCGTACTTCAGATGCCTCCTAGTACATTTGCCCATGGGATACCAGGGGTTCCAGTTCCTACTCCAAGAGATCCCTACAGGAACAATAACTGGGATACAAGACCTCCACCTCCTCTTGGGGGTTTTATGCCACCAATGAATGAGCATCGGAGTCCCTCTCGCAGGGGCAATGCTGGGCACCATCCGCGTGGAGACGGTGCCTATCATAACAGTTATGGCAACAGGCGAGATCAGGATCGCGGAAGTTATGCAAATTCTGGAGATGCTCATGTAAAGCAACCGAGGATGCCTCCAAGGGGATTAATGAGGCCCCCACCACCTAATCCTGCTTCATTTATGGGGCCTCAGCCTATGCGACCCTTTGCAAACCCTGCTGGGTTTCCTGAATTCTATTATTTCCCAACACTACAATTTGAACCCTTTGGGGGCATGCCATTCTTCACACATGCACCTCCTCCTGCAATGTTTTTCCCGGTTGCAGAAACTCCGCTCACCGATACAATAGTCCACCAAATTGATTATTACTTTAGTGATGCTAATTTAGTGAAGGATGAGTATTTAAGGTCCAACATGGATGAACAGGGATGGGTTCCTATTAACTTGATTGCAAGCTTTCCACGTGTTAGAAGTTTGACAAGCAACATCAAGTTGATACTGGATTCATTGAGAACTTCCACTGTTGTGGAAGTGCAAGGTGACAAGTTGAGGAGGCGTAATGAGTGGATAAAATGGCTGCCCTCTGCTCAACTTTGGGCCGACTCTGGTTCAGTATCCCCTACTGGATCAAGTTCTAATAACCTAGCAGCTGATTTTGACAAGATCACAATAGATGACGCTACTACAGATGAAGTTAATTCTGAGCCTACCACAAATGCTGCTCCTGCCACTGCAGGAGAGTCCTCCAATTAG 1224 0.4812 MGAVSWPALSESTKPTAKLMSDSSVKTDTDDGSLTTSQGPVISESPQKQATSNAKPSAAMNYGMTNRQRSMKRGGANGNNVGPGPAQNNFSGPSLNLPPPPPPPFPVLQMPPSTFAHGIPGVPVPTPRDPYRNNNWDTRPPPPLGGFMPPMNEHRSPSRRGNAGHHPRGDGAYHNSYGNRRDQDRGSYANSGDAHVKQPRMPPRGLMRPPPPNPASFMGPQPMRPFANPAGFPEFYYFPTLQFEPFGGMPFFTHAPPPAMFFPVAETPLTDTIVHQIDYYFSDANLVKDEYLRSNMDEQGWVPINLIASFPRVRSLTSNIKLILDSLRTSTVVEVQGDKLRRRNEWIKWLPSAQLWADSGSVSPTGSSSNNLAADFDKITIDDATTDEVNSEPTTNAAPATAGESSN 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4000 407 MobiDBLite consensus disorder prediction 386 407 - -
Ssu1g4000 407 MobiDBLite consensus disorder prediction 383 407 - -
Ssu1g4000 407 MobiDBLite consensus disorder prediction 1 112 - -
Ssu1g4000 407 PANTHER LUPUS LA PROTEIN-RELATED 1 401 IPR045180 -
Ssu1g4000 407 MobiDBLite consensus disorder prediction 124 212 - -
Ssu1g4000 407 PANTHER LA-RELATED PROTEIN 1B 1 401 - -
Ssu1g4000 407 CDD LAM 273 343 - -
Ssu1g4000 407 Pfam La domain 273 328 IPR006630 -
Ssu1g4000 407 MobiDBLite consensus disorder prediction 9 93 - -
Ssu1g4000 407 MobiDBLite consensus disorder prediction 94 110 - -
Ssu1g4000 407 Gene3D - 263 352 IPR036388 -
Ssu1g4000 407 SUPERFAMILY "Winged helix" DNA-binding domain 260 351 IPR036390 -
Ssu1g4000 407 SMART la 267 345 IPR006630 -
Ssu1g4000 407 ProSiteProfiles La-type HTH domain profile. 263 352 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4000 Ssu-Chr1 98829166 98832814 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0042 5 656975 659149 Ssu1g4000 1 98829166 98832814 PCT