Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3992 ATGCTTCCTTTAGTACCTTCTCCTCTTTCAATTTGTACTATTGTGCTCCGTTTCATGTTACTGTTAGTTGTTTCCTGCAAAACGAAGGGTATGGTGGAACTTCCACCAAATGTTTCGGTTCCAGCAGTGCTAGTGTTCGGAGATTCAATCATGGATAcgggcaacaacaacaacaacacgcAAACACTTGCTAAGTGCAATTTCCCTCCGTACGGGAGAGATTTCAAAGGAGGCATCCCAACTGGCCGATTTGGTAATGGAAAGGTTCCATCAGACCTAGTAGCTGAAGCATTGGGCATTAAGGAACTTCTGCCAGCATATTTCGATCCAAATCTCCAACCTAGCGATCTAGTCACTGGTGTTTGCTTTGCATCCGGTGGTTCAGGGTACGATCCTCTCACATCTAAAATAGCGTCAGCTATACCGTTGTCCGGTCAAATAGACATGTTCAAAGAATACATAAGCAAGTTAAAAGGACTCGTTGGAGAGGACAGAACAAACTTCATCCTAACCAATAGTATTTTTCTTGTGGTGGAAGGAAGCAACGACATTTCCAACACGTACTTCTTGAGTCATGCTAGGGAAGTGCAATATGATATTCCTGCTTACACTGACCTAATGGTCAGGTCAGCTTCTAATTTCTTAAAGGAAATATATCAACTTGGTGCTCGGAGGGTAGGAGTACTCAGTGCTCCACCAATTGGGTGTGTGCCATTTCAGAGGACACTGCTGGGAGGAATAGTTAGAAAATGTGCAGAAAAGTACAACGATGCGGCCAAGTTATTCAACAGCAAACTGTCAAAAGAGCTGGCTTCCCTTAACCGGAATTTGCCTAATGCGATGATGGTTTACCTTGATGTTTACAACCCTCTACTTGATATCATTgtaaattaccaaaattatgGTTTTCAAGTGGGAGACAGAGGATGCTGTGGTACGGGCAAAATAGAGGCCGCAGTGTTCTGCAACCCTTTGGAGGCCACGTGTCCGGATGTGGGAAACTACGTTTTTTGGGATAGTTTTCATCCTTCAGAAAATTGTTACAGAAAGCTCCCCTTGGTGGAAGGCAGCACTATGGCTCTGTTTATGAAGCTCTTTAGTTCTTCTTCAACTAGCCTAATGCTCCGTTTCATGTTATTGTTAGTTTTATCGTTCAGAACGAAGGCTGTGGTGAAACTACCACCAAATATTTCGATTCCTGCGGTGATAGCCTTCGGAGATTCGATCGTGGACCCGGGCAACAACAACAAGGTTAAAACACTCGTCAAGTGCAATTTTCGTCCTTACGGTAAAGATTTTGAGGGAGGGATCCCTACCGGTCGATTTTGCAACGGAAAAATTCCATCAGACCTGCTAGTTGAAGAATTGGGTATTAAGGAACTTTTACCAGCTTATTTGGATCCAAATCTCAAACCAAGTGACCTTGTTACCGGAGTCTGCTTTGCTTCTGGTGCTTCCGGATACGATCCTTTAACGCCAAAAATAGcgTCGGTGATATCAATGTCCGATCAACTAGACATGTTCAAAGAATACATAGGGAAGCTTAAACACATTGTTGGAGAGGACAGAACAAACTTCATCCTAGCCAATAGTTTTTTCCTTGTGGTAGCTGGAAGTGACGACATCGCCAACACCTATTTTATCGCTCGCGTTCGACAATTACAATATGATATTCCTGCTTACACTGACCTTATGTTCAACTCGGCTTCTGATTTCGTAAAGGAATTATATCGACTTGGAGCACGCAGAATCGGAGTACTGAGTGCACCACCAATTGGGTGCGTTCCATCACAGAGAACTCTGGCTGGAGGTATACAAAGAGAGTGCGCAGAAGAATACAATTACGCGGCCAAGTTATTTAACTCCAAACTGTCAAGGGAACTGGATTCTCTTAACCATAACTTGCCCAATAGCAGGATCGTTTACATTGACGTTTACAACCCCctacttgatatcattgtgaacTACCAACGTTATGGCTATAAAGTTGTGGATAGAGGTTGCTGTGGCACAGGCAAACTAGAAGTTGCAGTGTTATGCAACCCTTTGGATGTCACTTGTCCCGATGCTTCAGAATATGTTTTTTGGGATAGTTATCATCCTACCGAAGGAGTATACAGACAGCTCATAGTCCAAGTCCTACAAAAATATTTGACTCGATTCTTCTGA 2169 0.4205 MLPLVPSPLSICTIVLRFMLLLVVSCKTKGMVELPPNVSVPAVLVFGDSIMDTGNNNNNTQTLAKCNFPPYGRDFKGGIPTGRFGNGKVPSDLVAEALGIKELLPAYFDPNLQPSDLVTGVCFASGGSGYDPLTSKIASAIPLSGQIDMFKEYISKLKGLVGEDRTNFILTNSIFLVVEGSNDISNTYFLSHAREVQYDIPAYTDLMVRSASNFLKEIYQLGARRVGVLSAPPIGCVPFQRTLLGGIVRKCAEKYNDAAKLFNSKLSKELASLNRNLPNAMMVYLDVYNPLLDIIVNYQNYGFQVGDRGCCGTGKIEAAVFCNPLEATCPDVGNYVFWDSFHPSENCYRKLPLVEGSTMALFMKLFSSSSTSLMLRFMLLLVLSFRTKAVVKLPPNISIPAVIAFGDSIVDPGNNNKVKTLVKCNFRPYGKDFEGGIPTGRFCNGKIPSDLLVEELGIKELLPAYLDPNLKPSDLVTGVCFASGASGYDPLTPKIASVISMSDQLDMFKEYIGKLKHIVGEDRTNFILANSFFLVVAGSDDIANTYFIARVRQLQYDIPAYTDLMFNSASDFVKELYRLGARRIGVLSAPPIGCVPSQRTLAGGIQRECAEEYNYAAKLFNSKLSRELDSLNHNLPNSRIVYIDVYNPLLDIIVNYQRYGYKVVDRGCCGTGKLEVAVLCNPLDVTCPDASEYVFWDSYHPTEGVYRQLIVQVLQKYLTRFF 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3992 722 Gene3D SGNH hydrolase 394 718 IPR036514 -
Ssu1g3992 722 Gene3D SGNH hydrolase 35 351 IPR036514 -
Ssu1g3992 722 CDD SGNH_plant_lipase_like 41 349 IPR035669 -
Ssu1g3992 722 CDD SGNH_plant_lipase_like 400 717 IPR035669 -
Ssu1g3992 722 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 369 720 - -
Ssu1g3992 722 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 11 351 - -
Ssu1g3992 722 PANTHER GDSL ESTERASE/LIPASE EXL3 369 720 - -
Ssu1g3992 722 PANTHER GDSL ESTERASE/LIPASE EXL3 11 351 - -
Ssu1g3992 722 Pfam GDSL-like Lipase/Acylhydrolase 402 708 IPR001087 GO:0016788
Ssu1g3992 722 Pfam GDSL-like Lipase/Acylhydrolase 43 350 IPR001087 GO:0016788
Ssu1g3992 722 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 43 54 IPR008265 GO:0006629|GO:0016298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3992 Ssu-Chr1 98659877 98710134 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0043 5 714025 746812 Ssu1g3992 1 98659877 98710134 PCT
Ssu1g3992 1 98659877 98710134 Ssu5g0044 5 751344 755613 PCT