Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3969 ATGGAAACTCAACACCAACAACCCACCATCACGTCTAGGTTCAGACGCATCTGCGTCTACTGTGGTAGCAGCCCTGGAAAAAACCCCAGCTACCAGCTCGCTGCTATTCAACTCGGAAAACAACTGGTGGAGAGGAATATTGACTTGGTTTACGGAGGAGGAAGCATAGGGTTGATGGGTCTAATATCACAAGTTGTATATGATGGTGGACGCCACGTGTTAGGGGTGATTCCAAAGACGCTTAATGCAAGAGAGATCACTGGAGAGACTGTAGGAGAAGTAAGAGCTGTATCGGGCATGCACCAACGCAAGGCCGAAATGGCCCGACAAGCCGATGCATTTATTGCACTGCCAGGTGGATATGGCACCCTTGAAGAACTACTCGAGATTATCACCTGGGCTCAGCTAGGCATCCATGACAAACCGGTGGGGTTGTTGAATGTGGATGGGTACTACAACTCGCTGCTGGCATTCATGGACAAAGCTGTGGACGAAGGTTTCGTAACACCAGCTGCCCGTCACATTATTGTTTTCTGCCCAAACTGCCCAAGACCTCATGAATATGTCCCCGAGCACTGTGGCGTGGCCCCCAAGCTAAGTTGGGAGATCGAGCAACAGTTAGTTAACACTGCAAAGTCAGATATTTATCGTTGA 654 0.4954 METQHQQPTITSRFRRICVYCGSSPGKNPSYQLAAIQLGKQLVERNIDLVYGGGSIGLMGLISQVVYDGGRHVLGVIPKTLNAREITGETVGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEIITWAQLGIHDKPVGLLNVDGYYNSLLAFMDKAVDEGFVTPAARHIIVFCPNCPRPHEYVPEHCGVAPKLSWEIEQQLVNTAKSDIYR 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3969 217 Pfam Possible lysine decarboxylase 59 181 IPR031100 -
Ssu1g3969 217 Gene3D - 4 188 - -
Ssu1g3969 217 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 7 213 - -
Ssu1g3969 217 PANTHER LOG FAMILY PROTEIN YJL055W 7 213 - -
Ssu1g3969 217 TIGRFAM TIGR00730: TIGR00730 family protein 16 178 IPR005269 GO:0009691|GO:0016787
Ssu1g3969 217 SUPERFAMILY MCP/YpsA-like 13 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3969 Ssu-Chr1 98237467 98240014 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0073 5 1424191 1429206 Ssu1g3969 1 98237467 98240014 PCT