Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3964 ATGGATCGACGCTGGCCTTGGAAGAAAAAATCATCAGAAAAGTCTGTGATTGAGAAAGCAGCTACTGCATTGGATTCCTCTGATGCTTCCAACAACCAGGATAACAACAAGAAACCAAACTACATCCAAATCTCTGTGGATTCCTATTCACATCTGTCTGGCTTGGATGATCAAGTGAAGACATATGAAGAAAAAGTTCAGACACTAGAGGATGAGATCAAGGAAATGAATGAAAAGCTGTCCGCAGCAAACACTGAGATCAATACCAAGGAAAGCATGGTAAAACAACATGCTAAAGTAGCTGAGGAAGCTGTATCAGGCTGGGAAAAGGCTGAAGCTGAAGCTTTGGCATTGAAGAACCATCTAGAATCTGTCACTCTTTTAAAACTCACTGCTGAGGATCGCGCAACGCATTTAGATGGTGCTCTTAAAGAGTGTATGCGACAAATTCGAAACCTCAAGGAAGAACATGAACAGAAAATACAGGATGTTGCTCTCTCAAAAACCAAGCAATTAGACAAGATTAAGGGGGAGCTCGAGGCAAAGATAGTAAACTTTGAACAGGAACTTCTTAGGTCTGCTGCTGAAAATGGGGCCCTGTCAAGGTCATTGCAGGAGCGCTCTAACATGCTAATTAAATTAAGCGAAGAAAAGGCTCGTGCTGAGGCTGAAATTGAGCTTCTTAAGGGCAACATAGAAGCATGTGAAAGGGAAAATAATTCACTTAAATATGAACTTCATGTTGTTTCCAAAGAGCTTGAAATTCGCAATGAAGAAAAAAACATGAGTATGAGGTCTGCAGAAGCTGCTAACAAGCAGCATATGGaaggtgtaaaaaaaattgccaagTTAGAGGCTGAGTGCCAAAGATTACGTGGTCTTGTGAGGAAAAAGTTACCTGGTCCTGCTGCACTTGCACAGATGAAGCTAGAAGTTGAAAACCGTGGTCGAGATTTTGGAGAAAGTCGATTAAGGAAGTCTCCTGTGAAACCTGCTACCCCTAATTTGTCTCCACCACCCGATTTCTCCCTGGAGAATTTACAGAAATTCCAAAAGGAGAATGAATTTCTTACGGAGCGTTTGTtggcaatggaagaagaaacgAAGATGCTGAAAGAAGCGTTGGCTAAACGTAATAGTGAATTGCAGGCCTCAAGGAGTATGTGCGCTAAAACACTGAGCAAACTTCAAAGTTTGGAAGCACAATCTCAGACAAGCAACCAGCTGAAAGGATCTCCAAAATCCATCATCCAGATAACTCATGAAAGCATTTATAATCAAAATGCAAGCAGTGCACCAAGCTTGGTCTCCATGTCCGAAGATGGAAATGACGATGCAGCAAGTTGTGCTGAATCTTGGTCTACAGCAATAGTCTCTGGTCTATCCCAATTTCCTAAAGAAAAGTGCACTGAGGATTCAAGCAAATCTGAAGCCACTAATAAGAAGTTGGAACTAATGGATGACTTTCTGGAGGTGGAGAAGTTGGCTGGTTTGTCAAATGATTCTAGTGTAGAAGCCACTGTTTCAGTTTCTTCAAACAATAAGACAACTGACATTGTGACTAATGATTTATCAGAAGTCAGTACTGGCAAAGAAGGTCTGTCTGAAAAAAATGGCAGTTCAGATCCATTGCCAAATCAAATGTCTTCTGATGCTTTGATGTCAGCACCTGATCCTCAATCTGATGTTAGTGGCTTGTTATTAACAGAACTTAGATCAAGAATATTACTGGTTTTTGAGTCCTTGGCTAAGGATGCTGACATAGGGAAGATTGTGGAGGATATTAAACATGTGCTTGAAGATTCACATGACACTACCATCCACCACTCTGTGGATGCCCATCCTTCTGATGCTACATGTGATAGGAAGGATAATCCTGAAGATGCTGGCTTAAACCTTGAAAAGGAAATCATTTCATCCCAGCAACCCAAAGAATATGTGCAGATAACTTCAGATTTGGAAGCTGCAATTTCTCAGATTCATGACTTTGTATTGTTCCTTGGCAAGGAAGCAATGACATTTCATGACATATCTTCTGATGGAAATGAAATGAGGCAAAAGATTGAGGAGTTCTCTGTCAcctttaataaagtattatgCAAAAATGCAAGTTTGCTACAGTTTGTTCTTGACCTGTCCTATGTTTTAGATAAAGCAAGTGAATTCAGATTTAATGTCCTTGGCTACAAGGGCACAGAAGCTGAAACTAACAGTCCTGATTGCATAGATAAGATTGCTTTGCCTGAAAATAAGTTAGTACAAGACAATTCATTAGGAGAAAGATATCAAAATGGTTGTTCCCATATTCTTAATCCATGTTCTAATCCTGAGGCTCCTGATGATGGAAATTTGGTCTCAGGCTATAAAGCAGATGCTGCATCACAGAAACTGTCAATAGAGGAGTTTGAGGAATTGAAactagagaaagagaaagtagTGATTGATCTGTCAAATTGTACTGAAAATCTTGAAATGACAAAGTATCAATTGCTAGAGACTGAGCAACTTCTAGCTGAAGTTAAATCACAATTGGCTTCTGCTCAAAAATCAAACAGCTTGGCTGAGACACAGCTAAAGTGTATGGCAGAATCGTACAAGTCACTTGAAACACGTGCCCAGGACTTGGAAACTGAGCTGAACCATCTGCAAATCAAGATAGAATCTCTGGAGAAAGATCTTAAAGATGAAAATAGGGCTCGTGAAGCTGCTTTGGCCAGGAGCAAGGAGCTAGAAGAGCAGTTACAAAGGATTGAGTGCTCGGCAGCTGATAATGACCTCAAGCCTTCGCATGAGAGAGATTTGGCAGCTGCAGCTGAAAAGCTAGCTGAGTGTCAGGAAACCATACTTCTTCTGGGCAAGCAGTTAAATGCTCTACGTCCACAAAATGAGCCAGTTGACTCATCGTACAGTAAGATAAATCCAAAGGTTGAAGGCTTCACAGAAGATGAACCTACTACTAATAGcccaaaatttcaagaattaggTCAGTTGGAGATGGACAGTGCTACTTCTGCTTTTGTGCAAAGATTGAGTTCGGAGTCCCCCTTGCATTTTTCCAACAGTTTATTTAGCCCTTCGGACAGCGAGTCCACCCTTCCAGCCAGATCCCCGGTACAGCATTctaaaccaaaaccaaaacacaGGCCTACCAAGTCAGCctcttcttcagcttcttcctCCACTACACCTGAGAAACATGCACGGGGATTTAGTAGATTCTTTTCACCAAAAGGAAAATCCGGTCATTGA 3249 0.3961 MDRRWPWKKKSSEKSVIEKAATALDSSDASNNQDNNKKPNYIQISVDSYSHLSGLDDQVKTYEEKVQTLEDEIKEMNEKLSAANTEINTKESMVKQHAKVAEEAVSGWEKAEAEALALKNHLESVTLLKLTAEDRATHLDGALKECMRQIRNLKEEHEQKIQDVALSKTKQLDKIKGELEAKIVNFEQELLRSAAENGALSRSLQERSNMLIKLSEEKARAEAEIELLKGNIEACERENNSLKYELHVVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVENRGRDFGESRLRKSPVKPATPNLSPPPDFSLENLQKFQKENEFLTERLLAMEEETKMLKEALAKRNSELQASRSMCAKTLSKLQSLEAQSQTSNQLKGSPKSIIQITHESIYNQNASSAPSLVSMSEDGNDDAASCAESWSTAIVSGLSQFPKEKCTEDSSKSEATNKKLELMDDFLEVEKLAGLSNDSSVEATVSVSSNNKTTDIVTNDLSEVSTGKEGLSEKNGSSDPLPNQMSSDALMSAPDPQSDVSGLLLTELRSRILLVFESLAKDADIGKIVEDIKHVLEDSHDTTIHHSVDAHPSDATCDRKDNPEDAGLNLEKEIISSQQPKEYVQITSDLEAAISQIHDFVLFLGKEAMTFHDISSDGNEMRQKIEEFSVTFNKVLCKNASLLQFVLDLSYVLDKASEFRFNVLGYKGTEAETNSPDCIDKIALPENKLVQDNSLGERYQNGCSHILNPCSNPEAPDDGNLVSGYKADAASQKLSIEEFEELKLEKEKVVIDLSNCTENLEMTKYQLLETEQLLAEVKSQLASAQKSNSLAETQLKCMAESYKSLETRAQDLETELNHLQIKIESLEKDLKDENRAREAALARSKELEEQLQRIECSAADNDLKPSHERDLAAAAEKLAECQETILLLGKQLNALRPQNEPVDSSYSKINPKVEGFTEDEPTTNSPKFQELGQLEMDSATSAFVQRLSSESPLHFSNSLFSPSDSESTLPARSPVQHSKPKPKHRPTKSASSSASSSTTPEKHARGFSRFFSPKGKSGH 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3964 1082 Coils Coil 169 196 - -
Ssu1g3964 1082 MobiDBLite consensus disorder prediction 1017 1082 - -
Ssu1g3964 1082 MobiDBLite consensus disorder prediction 24 40 - -
Ssu1g3964 1082 MobiDBLite consensus disorder prediction 316 341 - -
Ssu1g3964 1082 MobiDBLite consensus disorder prediction 960 990 - -
Ssu1g3964 1082 MobiDBLite consensus disorder prediction 18 40 - -
Ssu1g3964 1082 Coils Coil 136 167 - -
Ssu1g3964 1082 Coils Coil 830 920 - -
Ssu1g3964 1082 Coils Coil 204 287 - -
Ssu1g3964 1082 SUPERFAMILY Tropomyosin 801 979 - -
Ssu1g3964 1082 MobiDBLite consensus disorder prediction 1017 1037 - -
Ssu1g3964 1082 MobiDBLite consensus disorder prediction 1050 1066 - -
Ssu1g3964 1082 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 1082 - -
Ssu1g3964 1082 MobiDBLite consensus disorder prediction 519 561 - -
Ssu1g3964 1082 Pfam Filament-like plant protein, long coiled-coil 90 964 IPR008587 -
Ssu1g3964 1082 PANTHER FILAMENT-PLANT-LIKE PROTEIN 1 1082 - -
Ssu1g3964 1082 Coils Coil 347 374 - -
Ssu1g3964 1082 Coils Coil 52 93 - -
Ssu1g3964 1082 MobiDBLite consensus disorder prediction 519 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3964 Ssu-Chr1 98101196 98105603 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0075 5 1475159 1479560 Ssu1g3964 1 98101196 98105603 PCT