Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3959 ATGGGTTCCGTTTCTCTGAAAATAGGCGACGGAACTGCGAGATTCAAAAGGGCAACACTGTGTTCCTCCTCCGCAGTTATTAACATTCTCATGATCTTCTCTGTCATCACCACCAACCTCTTCGCCCTCTACGCTTTCTCTTCTTCCCCAAGAGACCCTCACAACACCCACCACCTACTTCAAAAAAACTTCTCCCTCATCTCAGACCAGGTCACCCTCATTCTCCGAGAGATCGATTTCTCTCAGAAGAAACTGGCCCAGATAGAAAAAGACCTTCTAGGCTACGAAAGCCTCGACCTTTCCCGACCCAACATTGCAAACGAACTCAAGCTCTTTCTCCACCGCCACCACCTCCCTCTCGGCAAAGACTCCAAAACCGGAATCACCGAAATGGTCTCATCTGTCGGCCACTCCTGCGAGAAATCCTCGGACTTGTTGTCTCAGTACATGAGTTACAAGGTTTCTGGACCCTGCCCTGATGATTGGAGCGTGGCACAGAAGCTCATTTTGCGAGGGTGTGAGCCTTTGCCAAGAAGAAGGTGTTTCGCCAAAACTCTTTCTAAGGTGGGTCTTCTTCACCCTTTCCCATCCTCGCTTTGGAAGCGTGTTGGTAACAAAACTGTCAACTGGGGTGGTTTAAGTTGCAAGAGTTTCGAGTGTCTGAATGGTAAGAAGTTGAGTAGGGATTGCATTGGTTGCTTTGATTTGGTTAATGGGTATGAGAATCAGAGGTTTGTCAAGTCTAGGAGTAAGAATGATTTTCTCGTTGATGATGTGTTGGGTTTGGGAAGTGGTGGAATTAGGATAGGGCTTGATGTTGGAGGTGGGTCTGGGTCCTTCGCTGCTGTGATGGCTGAGAGGAACGTTACTGTGGTTACTAGCACTTTGAATGTTGATGCTCCGTTCAGTGAATTCATTGCTGCAAGAGGGCTTTTCCCTCTTTTCTTGAGCTTGGATCATAGGTTCCCGTTTTATGACAATGTGTTTGATTTGGTGCGTGCTGCGAGTGGCTTGGATGGTGGAGGGAGGGCAGAGAAGTTGGAGTTTTTGATGTTCGATATTGATCGTGTTTTGCGGGCTGGTGGTTTGTTTTGGCTGGATAACTTCTATTGTGTtgatgaagagaagaaaagggCGTTGACTAGGTTGATTGAACGGTTTGGGTACAAAAAGTTGAAGTGGGTCGTGGGGGAGAAGGTTGATAGTCTTGGATCAGGCAAGTCTCAAGTTGTTTTATCAGCTGTGCTTCAGAAGCCTGTAAGGGTGTAA 1269 0.4665 MGSVSLKIGDGTARFKRATLCSSSAVINILMIFSVITTNLFALYAFSSSPRDPHNTHHLLQKNFSLISDQVTLILREIDFSQKKLAQIEKDLLGYESLDLSRPNIANELKLFLHRHHLPLGKDSKTGITEMVSSVGHSCEKSSDLLSQYMSYKVSGPCPDDWSVAQKLILRGCEPLPRRRCFAKTLSKVGLLHPFPSSLWKRVGNKTVNWGGLSCKSFECLNGKKLSRDCIGCFDLVNGYENQRFVKSRSKNDFLVDDVLGLGSGGIRIGLDVGGGSGSFAAVMAERNVTVVTSTLNVDAPFSEFIAARGLFPLFLSLDHRFPFYDNVFDLVRAASGLDGGGRAEKLEFLMFDIDRVLRAGGLFWLDNFYCVDEEKKRALTRLIERFGYKKLKWVVGEKVDSLGSGKSQVVLSAVLQKPVRV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3959 422 Gene3D Vaccinia Virus protein VP39 238 408 IPR029063 -
Ssu1g3959 422 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 255 392 IPR029063 -
Ssu1g3959 422 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 1 422 - -
Ssu1g3959 422 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 264 391 IPR004159 GO:0008168
Ssu1g3959 422 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN-RELATED 1 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3959 Ssu-Chr1 97985136 97986404 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0079 5 1625953 1627215 Ssu1g3959 1 97985136 97986404 PCT