Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3951 ATGACGACGACgacccttcttcttcttctacgtTCCTtgctcttccaccttctcctCCTCTCCGCAACCGTTTCCGAAGCTTCCAACGGCCAATGGCAGCTCCTTCACAAAAGCATCGGCATCGTCGCCATGCACATGCAGCTTCTGAACAACGACCGCGTCATCATCTACGACCGCACGGACTTCGGCACGTGCCGCCGCGACCCCTCCGAGAAGGTTCACAAAACAGACTGCACCGCTCACTCCGTCGAATACGACGTCGCATCCAACACCTTCCGCGCGCTCTTCGTCCAAACCGACGTCTGGTGCTCCTCCGGCGCCGCCGTCGCCGACGGCACACTCTTCCAAACCGGCGGCTACAACGACGGCGAACGCAAGATAAGGTCCTTCGTCCCGTGCGAGACCTGCGACTGGCGAGAAACCGATGATGCCCTCCTGGTTAAGCGGTGGTACTCCACCAATCACTACTTGCCAGATGGACGAGTCATTATAATCGGAGGAAGAAGACAATTTAATTACGAGTTTTACCCTAAGAAAGAAACGGAGCGTGTTAAACCCTACGCGTTACCGTTTCTGTTTCAGACACATGACAAGGGCGCGGAGAACAATCTTTATCCGTTTGTGTTTTTAAACGTTGACggaaacctttttattttcgcGAACAGCCGCGCGATTCTGTTTAACTACCAAAACGACACCGTTGTGAGGACGTACCCGGAGATACCGGGGGGAGATCCTAGGTGTTATCCTAGTACCGGTTCCGCGGTTTTGTTGCCTTTGAAGAATTTGGAAGCGGAGAATGTTGAGGCCGAGGTTTTGGTCTGCGGTGGGGCCCGCAGGGGGGCTTTTCAGCTTGTGGCGAAAGGTGTTTTTTCCGAAGCGTTGGATTCTTGCGCGAGGATTAAGATTACGGATTCGGATCCGGAGTGGGTGGCGGAGTCCATGCCGATGGGGAGAGTGATCAACGACATGTTGATGCTCCCGAACGGCGACGTTTTAATTATAAACGGAGCTGAATTGGGAGCGGCTGGGTGGGACAAAGCGAAGAAAGCGGTTCTTGAACCGGTTGTTTATAAAACGAACAGTTCGGTTGGGTCGCGGTTCGTGTTGCAAAAAGCGGGTAATGTTCCTAGGATGTATCACTCAACGGCCCTTTTGGTTCGTGATGGAAGGGTTCTCGTGGGTGGCAGCAACCCTCACGAAAAGTACGTGTTCTCTAACGTGTCTTACCCTACGGAGTTGAGTTTGGAGGCTTTTTCTCCTTACTATTTGGACCCTCAGTTTTCACCCTTGCGTCCCATGATTCTAGAGCCTGGTTCTCATGCTAACATCACGTACGGTGAGAAATTTAAGATAAGTATTCGGGTGAATGGGACGCTTGTGCCTGAGTTGGTGTCGGTGACGATGTTGGCGCCGCCGTTTAACACGCACTCTTTCTCCATGAATCAGAGGTTGTTGGTGTTGTCGATGGGCGAAGTTAATGTTAGTGGAAATTCGAGTTATGAATTTGGGGTGACGGCGCCCGGTTCCGCTGTCCTTGCACCACCCGCGTTCTATTTGCTGTTTGCGGTTCATCAAGACGTTCCCAGCGAAGGAATCTGGATCAAGATGCAATGA 1617 0.5059 MTTTTLLLLLRSLLFHLLLLSATVSEASNGQWQLLHKSIGIVAMHMQLLNNDRVIIYDRTDFGTCRRDPSEKVHKTDCTAHSVEYDVASNTFRALFVQTDVWCSSGAAVADGTLFQTGGYNDGERKIRSFVPCETCDWRETDDALLVKRWYSTNHYLPDGRVIIIGGRRQFNYEFYPKKETERVKPYALPFLFQTHDKGAENNLYPFVFLNVDGNLFIFANSRAILFNYQNDTVVRTYPEIPGGDPRCYPSTGSAVLLPLKNLEAENVEAEVLVCGGARRGAFQLVAKGVFSEALDSCARIKITDSDPEWVAESMPMGRVINDMLMLPNGDVLIINGAELGAAGWDKAKKAVLEPVVYKTNSSVGSRFVLQKAGNVPRMYHSTALLVRDGRVLVGGSNPHEKYVFSNVSYPTELSLEAFSPYYLDPQFSPLRPMILEPGSHANITYGEKFKISIRVNGTLVPELVSVTMLAPPFNTHSFSMNQRLLVLSMGEVNVSGNSSYEFGVTAPGSAVLAPPAFYLLFAVHQDVPSEGIWIKMQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3951 538 PANTHER OXIDASE, PUTATIVE, EXPRESSED-RELATED 17 538 - -
Ssu1g3951 538 SUPERFAMILY E set domains 429 537 IPR014756 -
Ssu1g3951 538 Pfam Galactose oxidase-like, Early set domain 432 536 IPR015202 -
Ssu1g3951 538 PANTHER SECRETED PROTEIN-RELATED 17 538 - -
Ssu1g3951 538 SUPERFAMILY Galactose oxidase, central domain 82 425 IPR011043 -
Ssu1g3951 538 Pfam Glyoxal oxidase N-terminus 44 277 IPR009880 -
Ssu1g3951 538 CDD E_set_GO_C 428 537 IPR015202 -
Ssu1g3951 538 Gene3D Immunoglobulins 431 538 IPR013783 -
Ssu1g3951 538 Gene3D - 26 427 IPR037293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3951 Ssu-Chr1 97863386 97865030 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3951 1 97863386 97865030 Ssu5g0085 5 1881443 1883071 PCT