Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3950 ATGTCGCTGGGAGCAATCCTCACAACTAGATTCTCTAACGTGCGTCCCACAATAGTGTCTCCTACTTCCCAAACCAAACTCAAGTATGCTGAAACTTCGGTTCGAGTAGGAGTTTTGGTTCGGGATTCGGTGTCGGTGACGAGGCTGGCGCCGCCTATTGCAACGCATTCGTTCTCCATGAATCAGAGGCTGTTGGTGCTGGAGCCGCACGATTTGAGTGAGGTTGCGAAATCAACGTACAAGGTTGAAGTCACCGCGCCGGGTTCGGCGGTTCTTGCACCACCCGGTTTTCTATCTACTGTTTGTAGTCTACCAAGAAATTCCAAGCCACGGTATTTGCGTCCGGAGGGATAG 354 0.5169 MSLGAILTTRFSNVRPTIVSPTSQTKLKYAETSVRVGVLVRDSVSVTRLAPPIATHSFSMNQRLLVLEPHDLSEVAKSTYKVEVTAPGSAVLAPPGFLSTVCSLPRNSKPRYLRPEG 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3950 117 Gene3D Immunoglobulins 14 104 IPR013783 -
Ssu1g3950 117 SUPERFAMILY E set domains 11 97 IPR014756 -
Ssu1g3950 117 PANTHER OXIDASE, PUTATIVE, EXPRESSED-RELATED 7 97 - -
Ssu1g3950 117 Pfam Galactose oxidase-like, Early set domain 15 97 IPR015202 -
Ssu1g3950 117 PANTHER SECRETED PROTEIN-RELATED 7 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3950 Ssu-Chr1 97840383 97840820 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0085 5 1881443 1883071 Ssu1g3950 1 97840383 97840820 PCT