Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3947 ATGGCGGAAGAGGCAAGCAAAAACGACGTCGGATTAACGTCCAAAACGAGAAGCTTCAGGTTATGGCCTCGTTGGATTCCCACTTCCATGGATCACATAATCGCTGCCGAGAAGCGCCTTCTTTCCGTCGTCAAGACTGGTTATGTTCAAGAGCATGTTAATATAGGGTCTGGTCCTCCTGGCTCCAAAGTTAGATGGTTCCGTTCAGCCAGCAACGAGCCGCGGTTTATTAACACCGTTACATTTGACAGTAAACCTGATTCTCCTACGCTTGTGATGATTCATGGTTATGCTGCTTCCCAGGGGTTCTTTTTTCGCAATTTTGCTGCACTTGCCTCTCGGTTTAGAGTCATTGCTGTTGATCAACTTGGATGGGGTGGATCAAGCAGACCTGATTTCACATGCAAAAGCACTGAAGAAACTGAGGCGTGGTTCATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAACTTGAGCAACTTTATACTACTTGGACATTCTTTTGGTGGTTATGTTGCTGCTAAATATGCGCTCAAGCACCCTGAGCATGTACAACACTTGATTCTGGTTGGACCTGCTGGATTTTCATCAGAATCAGATGCAAAGTCTGAGTGGTTTATGAGGTTTCGAGCAACATGGAAGGGAGCAGTTCTGAACCATCTATGGGAATCTAATTTTACACCTCAAAAACTTGTCAGGGGTTTAGGTCCTTGGGGTCCCAACATAGTCCGCAGGTATACAAGTGCTAGGTTTGGTACACATTCAACTGGGGAAATACTGACCGAAGAGGAATCATCATTGCTGACAGATTATGTTTACCACACATTGGCGGCCAAAGCTAGTGGGGAGCTgtgcttaaaatatattttttcatttggaGCATTTGCTAGGATGCCCCTTCTTCTCAGTTCCTCCGAGTGGAAAGTGCCCACCACTTTCATATATGGTTTCCAAGACTGGATGAATTATCAAGGTGCCCAAGAAGCTCGCAAGCATATGAAGGTTCCATGCGAAATCATCAGGGTTCCTCAGGCCGGGCATTTTGTGTTCATTGACAACCCAACTGCCTTCCATCCAGCTGTCTTTTATGCTTGTCGAAGGTTTCTTACACCTGATCCAGACAATGAATCTCTTCCTGAAGGGCTAACCTCTGCATAG 1158 0.4482 MAEEASKNDVGLTSKTRSFRLWPRWIPTSMDHIIAAEKRLLSVVKTGYVQEHVNIGSGPPGSKVRWFRSASNEPRFINTVTFDSKPDSPTLVMIHGYAASQGFFFRNFAALASRFRVIAVDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDAKSEWFMRFRATWKGAVLNHLWESNFTPQKLVRGLGPWGPNIVRRYTSARFGTHSTGEILTEEESSLLTDYVYHTLAAKASGELCLKYIFSFGAFARMPLLLSSSEWKVPTTFIYGFQDWMNYQGAQEARKHMKVPCEIIRVPQAGHFVFIDNPTAFHPAVFYACRRFLTPDPDNESLPEGLTSA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3947 385 PANTHER BNAA01G13630D PROTEIN 9 372 - -
Ssu1g3947 385 PANTHER RE40534P-RELATED 9 372 - -
Ssu1g3947 385 Gene3D alpha/beta hydrolase 75 365 IPR029058 -
Ssu1g3947 385 SUPERFAMILY alpha/beta-Hydrolases 79 361 IPR029058 -
Ssu1g3947 385 Pfam alpha/beta hydrolase fold 89 354 IPR000073 -
Ssu1g3947 385 PRINTS Alpha/beta hydrolase fold signature 177 190 IPR000073 -
Ssu1g3947 385 PRINTS Alpha/beta hydrolase fold signature 114 129 IPR000073 -
Ssu1g3947 385 PRINTS Alpha/beta hydrolase fold signature 163 176 IPR000073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3947 Ssu-Chr1 97762809 97767656 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0090 5 1959628 1963330 Ssu1g3947 1 97762809 97767656 PCT