Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3922 ATGGCGGAAGAGGGACAAGTGATCAGCATCCACAGCGTGGAGGCGTGGAAAGAACATCTCGAGAAGGGAAATGAGTCCAAGAAACTGGTTGTGGTGGATTTTACTGCTTCTTGGTGCGGTCCATGCCGTTTCATTTCCCCAATTCTAGCAGAGATTGCTAAAAAGATGCCGAATATCATCTTCCTCAAGGTGGATGTGGATGAATTGGAGACTGTTTCCAGGGAGTGGGGCATTGAGGCTATGCCAACCTTCCTGTTCTTGAAAGAAGGCAAGCTGGTGGACAAGGTTGTGGGTGCCAAGAAAGAGGAGCTGCAATTGACAATAAGCAAACATGCAACGGCTGCTGCCTGA 351 0.49 MAEEGQVISIHSVEAWKEHLEKGNESKKLVVVDFTASWCGPCRFISPILAEIAKKMPNIIFLKVDVDELETVSREWGIEAMPTFLFLKEGKLVDKVVGAKKEELQLTISKHATAAA 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3922 116 CDD TRX_family 18 103 - -
Ssu1g3922 116 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
Ssu1g3922 116 Gene3D Glutaredoxin 1 115 - -
Ssu1g3922 116 Pfam Thioredoxin 10 108 IPR013766 -
Ssu1g3922 116 PANTHER THIOREDOXIN 1 114 - -
Ssu1g3922 116 SUPERFAMILY Thioredoxin-like 4 111 IPR036249 -
Ssu1g3922 116 PRINTS Thioredoxin family signature 38 47 - -
Ssu1g3922 116 PRINTS Thioredoxin family signature 30 38 - -
Ssu1g3922 116 PRINTS Thioredoxin family signature 77 88 - -
Ssu1g3922 116 PANTHER THIOREDOXIN 1 114 - -
Ssu1g3922 116 ProSiteProfiles Thioredoxin domain profile. 1 113 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3922 Ssu-Chr1 97273583 97275132 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0101 5 2228572 2230475 Ssu1g3922 1 97273583 97275132 PCT