Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3840 ATGTACACTACTTCGCACACAGTAATGCCAACCTTTACACCCTTGCCAGAGCCAGACCTCTCCTTAAACATGAGCCCACCCTTCACTTCAGATTCTGTCGCCAAACAAGTGGGAACAAGCTGGAACGGATTAACGTCAACTCCCAAAATGCTTTACAACGATATGTGCTCAACCTCGGATTCTGGTAGCACTGGAAGCGATTTCAGCCACGAAAATGGTTTTTTCCCCAGGGACACTGTCTACAGCCTTGGTCATCGTGTACCGACATTGAGCTTAGGCTTCGAAACAGCAAATTTGGATCCTTATCCAGTGCAAGCAGCACCCTCGAGAAGCTTCAATCACCCCCACAGCTACCAACCTCACACCAATACCCGCGATTTCAAACGAAATGCTAGAGCCATTCACGGTGTGAAAAGAAGCACCAGAGCTCCCAGAATGCGATGGACTACGACCCTCCATGCTCATTTTGTTCATGCTGTTCAGCTTCTTGGTGGTCATGAAAGGGCAACTCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACTCTAGCTCACGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCTCTGACAAAGGCAGCGCAGGTTATGGGCAGACAGATATAGGGTTGAGCCAAAAGCCAGGGATTGTCGACCTGCATGGAGTCTTAGCTTGTGAGAGAGCCAATTTGCCACTTTTGCAGCAAAAATCCCAGAGGGCGTCATGGCAATCACCGATAGAGACAAATGCAATTAATTATTTCCAAAAACCCGAAATCAATTTGATGTATTCTCATCTGAAAGGAAACCAAACCATGgTGGGTGGACAGCATTATGGAGGCCTGTCGAATTGCATGAAGGAGAAATTGGATTCTTGCTCTTTGTCACGTTCCGATGTGATGCTTGACCTAGAATTTACCCTTGGAAGGCCCACTAATTGCAAAAAGACCACGCGGAATCAAGAGAATTAA 984 0.4624 MYTTSHTVMPTFTPLPEPDLSLNMSPPFTSDSVAKQVGTSWNGLTSTPKMLYNDMCSTSDSGSTGSDFSHENGFFPRDTVYSLGHRVPTLSLGFETANLDPYPVQAAPSRSFNHPHSYQPHTNTRDFKRNARAIHGVKRSTRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSSDKGSAGYGQTDIGLSQKPGIVDLHGVLACERANLPLLQQKSQRASWQSPIETNAINYFQKPEINLMYSHLKGNQTMVGGQHYGGLSNCMKEKLDSCSLSRSDVMLDLEFTLGRPTNCKKTTRNQEN 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3840 327 SUPERFAMILY Homeodomain-like 141 198 IPR009057 -
Ssu1g3840 327 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 319 - -
Ssu1g3840 327 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 319 IPR044847 GO:0000976|GO:0006355|GO:0010158
Ssu1g3840 327 Pfam Myb-like DNA-binding domain 145 196 IPR001005 -
Ssu1g3840 327 Gene3D - 143 200 - -
Ssu1g3840 327 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 144 197 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3840 Ssu-Chr1 95658228 95661808 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu1g3840 Myb_DNA-binding 1.4e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0195 5 4158734 4162232 Ssu1g3840 1 95658228 95661808 PCT