Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3833 ATGAGCACCGCTAGCTCCAACAAGCTTTCTTCTCCTTCACCCACGCTCCAGCAACGCAGGCTCACCCGACAGAGGAGGCTTCGGTATCTGACTGACAAAGACGCTGGTCTGCATTCGACCACTTCCCTACCCGCTTCTCCTCTTCCCTCCTTTAAGTCCGGTTCCACTTCCGACCACTGGTCTTCCTCTGCGGTTCCTCAACCGCTTCCGCTTCCCGAGTCCCCGTTGACCCGCCGACACGACCATCAGCACCTTGGATCTCCCCCTTTCGAACGTCCTGGCTTTGCTTTTCCCAGAAGGTCAGTGGATCATGATGGGGTGAGAAGTTTAAGGTCTGCAAGCAATTTGGGTAGACCTTCTTTTGATCCGGCGACTGCAAATGCGAAATATGATTTGAGAGTCAATATTCCGCGTGCAAGAGTTTTGGCAGGCAATACTAGTTCATGGAAAGATCACAGAGAACTGTCTCATGATAATGACTCTGAAAATGATTCCAACTTGAGATTGCATTTTGCGGCCAAGAGTGCCCCGACGAGCATATTCTCTAGTCCTGTTACTAGTCCACGTAGATCCAGCAATGTAGATTTTTATGATCCTTCCATCATTTTTCCTCAAGATTTTCTTGACATTTTGAAAGTGTCACCGGCTAAAAGTGCTCAGAGTCCAGACCGGTCTCCTCTGCGCAGCCCAGGGAGTCACCTCAATCAAGAGGGATCTAAATTTTGCTCCAGAGCGTGGCCCGAAAATAATCATGTGGATGCACATCCACTGCCCCTTCCTCCTAGAGCTTCACCACAGTCAGCACACTCATCTGCGCAGCATCAACCAAGTATCGTGCATCTCACTACAGAAAATTCGCCTTCAATGAAAGGTCAATGGCAGAAAGGAAAACTTATTGGGCGTGGATCATATGGATCTGTTTACCATGCAACCAACCTAGAGACTGGAGCCTCATGTGCAATGAAAGAGGTGGATCTGTTCCCTGATGATCCTAAATCTGGTGACTGCATAAAGCAACTAGAGCAGGAAATCAGAATTCTCCGTCAATTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATAGTTGGCGATCGATTGTACATATATATGGAGTATGTTCATCCTGGTTCACTTCATAAGTTTATGCATGAACATTGTGGAGCTATGACAGAATCTGTGGTTCGCAATTTCACAAGACATATTCTCTCTGGATTGGCATACTTACATAGTACCAAGACTATTCACAGGGATATCAAAGGTGCAAACTTGTTGGTCGattcatcaggcattgttaagCTTGCAGATTTCGGGGTGTCAAAAATTCTGACAGAGAAATCATATGAACTTTCATTGAAGGGCAGTCCCTACTGGATGGCTCCGGAGCTCATGAAGGCTGCCATAAAGAAAGAATCCAGTCCTGACGTAGCCATGGCCATTGATATATGGAGCTTAGGGTGCACTATCATCGAAATGCTGACAGGAAAACCTCCTTGGAGCGAATTTGAAGGGCCTCAAGCCATGTTCAAGGTACTGCACAAATCCCCAGATATACCTGAAAATTTGTCTTCAGATGGACAGGATTTCCTTCAGCAGTGTTTCAGAAGGAATCCCGCAGAACGACCATCGGCAGCATTGCTTCTTACACATGACTTTGTACAAAATTTGCACGATCAAGATGTTCTAGTTCATTCGCCAGCCTGTCCGAGAGGAGACCCTGGACCAGGAGATGATTCACGTAGACATAGTCCCAGTCCCAGTTCAAGAAATAGCCGTGGTGTAGTGCCAACATCCATTCGCGCACGGCTTCttaacaaaattcataatttaataggTGACACTTCCAAAAAATATGATACCGAGGAATCTAATAATGGCACATCTTCTCGTGACTCTCCTTGCTCGACGACAGAAACAAACAGTCCTCAATCTCCCTTGAAATCTAGTGACCTCAATTACATGTCTGTTGCCAATTCCAGCAACATACCCTTTAGCTTAAAAGTTAGAAGGATCGTAACAGGGACGGGGGCATAA 2037 0.4566 MSTASSNKLSSPSPTLQQRRLTRQRRLRYLTDKDAGLHSTTSLPASPLPSFKSGSTSDHWSSSAVPQPLPLPESPLTRRHDHQHLGSPPFERPGFAFPRRSVDHDGVRSLRSASNLGRPSFDPATANAKYDLRVNIPRARVLAGNTSSWKDHRELSHDNDSENDSNLRLHFAAKSAPTSIFSSPVTSPRRSSNVDFYDPSIIFPQDFLDILKVSPAKSAQSPDRSPLRSPGSHLNQEGSKFCSRAWPENNHVDAHPLPLPPRASPQSAHSSAQHQPSIVHLTTENSPSMKGQWQKGKLIGRGSYGSVYHATNLETGASCAMKEVDLFPDDPKSGDCIKQLEQEIRILRQLHHPNIVQYYGSEIVGDRLYIYMEYVHPGSLHKFMHEHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSSGIVKLADFGVSKILTEKSYELSLKGSPYWMAPELMKAAIKKESSPDVAMAIDIWSLGCTIIEMLTGKPPWSEFEGPQAMFKVLHKSPDIPENLSSDGQDFLQQCFRRNPAERPSAALLLTHDFVQNLHDQDVLVHSPACPRGDPGPGDDSRRHSPSPSSRNSRGVVPTSIRARLLNKIHNLIGDTSKKYDTEESNNGTSSRDSPCSTTETNSPQSPLKSSDLNYMSVANSSNIPFSLKVRRIVTGTGA 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3833 678 MobiDBLite consensus disorder prediction 564 598 - -
Ssu1g3833 678 MobiDBLite consensus disorder prediction 215 239 - -
Ssu1g3833 678 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 5 667 - -
Ssu1g3833 678 MobiDBLite consensus disorder prediction 264 292 - -
Ssu1g3833 678 ProSitePatterns Protein kinases ATP-binding region signature. 299 322 IPR017441 GO:0005524
Ssu1g3833 678 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g3833 678 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 5 667 - -
Ssu1g3833 678 SMART serkin_6 293 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3833 678 SUPERFAMILY Protein kinase-like (PK-like) 269 593 IPR011009 -
Ssu1g3833 678 MobiDBLite consensus disorder prediction 1 101 - -
Ssu1g3833 678 MobiDBLite consensus disorder prediction 252 293 - -
Ssu1g3833 678 Pfam Protein kinase domain 294 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3833 678 ProSiteProfiles Protein kinase domain profile. 293 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3833 678 MobiDBLite consensus disorder prediction 218 239 - -
Ssu1g3833 678 MobiDBLite consensus disorder prediction 615 650 - -
Ssu1g3833 678 MobiDBLite consensus disorder prediction 626 650 - -
Ssu1g3833 678 MobiDBLite consensus disorder prediction 35 64 - -
Ssu1g3833 678 Gene3D Transferase(Phosphotransferase) domain 1 290 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3833 Ssu-Chr1 95523422 95529550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3833 20 556 MAP Kinase Kinase Kinase AT5G66850 46.206 3.07e-150 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu1g3833 Pkinase 4.3e-66 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0205 5 4319774 4328886 Ssu1g3833 1 95523422 95529550 PCT