Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3828 ATGGAAGCAATGAACAGAAGCTCTTCTTCCACTACCTCGTCCTCGGACTCTTGCTCTTCCGAGTCCAACCACAGGAACCCCAACAAGCCCGACAGAATCAAAGGCCCATGGAGCGCGGAAGAGGACCGGATCCTGACCCGACTTGTTGAGCGATACGGGCCGCGAAACTGGTCCCTCATCAGCCGCTACATAAAGGGCAGGTCCGGCAAGTCGTGCCGGCTCCGGTGGTGCAACCAGCTGAGCCCCGCCGTGGAGCACCGCCCCTTCTCGGCCCAAGAGGATGAGACCATCATCGCGGCCCACGCCCAGTACGGCAACAGGTGGGCCACCATTGCCCGATTGCTACCGGGCCGAACCGACAATGCCGTTAAGAACCACTGGAACTCCACGCTCAAGCGCAGAGCCAAGGGCGGGGGCGTCGTTAATGTTGGTGCCAACGAAGGAGGCACTTCTTCTTCCGCTCCTTCTCGCCCCTTCGAGGATGACCCGTTGACCGCGTTGACTCTCGCTCCTCCCGGTGTTGGCAACGGCGCTGTGGCCGAGGACGCCGTGCCGGACCACCGGCCCTCGCCGGAAAGTGCGCCGCCGGGGTTTTGGGATATGATGAAGGATGTGATCGCGAGGGAAGTGAGGGAATATGTGTCTTCCAATTTTTCTGACAACTCGGGTTttcattaa 678 0.6018 MEAMNRSSSSTTSSSDSCSSESNHRNPNKPDRIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSAQEDETIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKGGGVVNVGANEGGTSSSAPSRPFEDDPLTALTLAPPGVGNGAVAEDAVPDHRPSPESAPPGFWDMMKDVIAREVREYVSSNFSDNSGFH 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3828 225 SMART sant 85 133 IPR001005 -
Ssu1g3828 225 SMART sant 33 82 IPR001005 -
Ssu1g3828 225 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
Ssu1g3828 225 MobiDBLite consensus disorder prediction 1 37 - -
Ssu1g3828 225 CDD SANT 88 131 IPR001005 -
Ssu1g3828 225 Gene3D - 87 147 - -
Ssu1g3828 225 Gene3D - 33 85 - -
Ssu1g3828 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
Ssu1g3828 225 PANTHER MYB PROTEIN-RELATED 2 211 - -
Ssu1g3828 225 MobiDBLite consensus disorder prediction 1 24 - -
Ssu1g3828 225 PANTHER MYB TRANSCRIPTION FACTOR 2 211 - -
Ssu1g3828 225 MobiDBLite consensus disorder prediction 173 198 - -
Ssu1g3828 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 135 IPR017930 -
Ssu1g3828 225 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
Ssu1g3828 225 Pfam Myb-like DNA-binding domain 37 95 - -
Ssu1g3828 225 CDD SANT 36 78 IPR001005 -
Ssu1g3828 225 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3828 Ssu-Chr1 95454209 95454886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3828 31 142 MYB Transcription Factor Family AT3G50060 76.786 7.71e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g3828 Myb_DNA-bind_6 1.6e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0206 5 4333164 4333844 Ssu1g3828 1 95454209 95454886 PCT