Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3817 ATGCAATCGTCTAACGGCTCCGATTCGCAAGCGACGGAGCAGAATCAGGCAGCGCCGGCGGCGCAGGCAGTGGCGGTGCCGCCGCAGTGGATGCCGATGCAGTACCCGGCGGCGGCGATGGTAATGCAGCACCACATGATACCGCCTCAACACTACGCGCCGCCGCCGCCGCAGCCCTACATGGCTTACCACCAATACCAGCAGCAGGTGGCGCACGTGCCGCCGCACGGGCACCACCAGGGATCCAGCGCCGAGAACAAGACCATATGGGTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCTCATGGCACAGCAGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACCGGAGACAAGCGTTCAGATAATGTTCCCGATCTTTCTATTTTGTAG 552 0.5507 MQSSNGSDSQATEQNQAAPAAQAVAVPPQWMPMQYPAAAMVMQHHMIPPQHYAPPPPQPYMAYHQYQQQVAHVPPHGHHQGSSAENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3817 183 MobiDBLite consensus disorder prediction 1 19 - -
Ssu1g3817 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 156 IPR000504 GO:0003723
Ssu1g3817 183 SUPERFAMILY RNA-binding domain, RBD 55 170 IPR035979 GO:0003676
Ssu1g3817 183 CDD RRM1_SECp43_like 88 168 - -
Ssu1g3817 183 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 23 182 - -
Ssu1g3817 183 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 23 182 - -
Ssu1g3817 183 MobiDBLite consensus disorder prediction 1 23 - -
Ssu1g3817 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 167 IPR000504 GO:0003723
Ssu1g3817 183 Gene3D - 86 166 IPR012677 -
Ssu1g3817 183 SMART rrm1_1 88 163 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3817 Ssu-Chr1 95235765 95237545 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3817 89 172 Eukaryotic Initiation Factors Gene Family AT4G34110 32.184 9.49e-08 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0213 5 4480932 4484978 Ssu1g3817 1 95235765 95237545 PCT