Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3805 ATGTCTGCTCGGAGTGAACGCCGAACGGTTCCTCTTTCGGTGCTGCTGAAGCGTGAGTTGGCAAACGAGAAAATCGAGAAGCCCGAGGTTGTTGTCGTGCACGGCCAAGCTAGTGAGGATAAGAAAGGAGAGGATTTCACGCTATTGAAGACGGAACGCCAAAGGGTGGTGGGAGATGGAGTTTCTACGTATTCTGTTTTTGGGCTATTCGATGGACACAACGGAACTGCTGCGGCTATTTATGCCAAGGAGAATCTTCTAAACAACGTTTTAAGTGCGATTCCTTCCGATCTTAACAGAGATGAGTGGGTAGCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTGAAAACTGATAAAGATTTTCAACAGAAAGCACAATCATCGGGAACAACTGTAACCTTTATGATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGCTGCATACTTGAGCCTTCTGAAGGTGGGATTTACTACTTGTCAGCAGACCATAGACTAGAAAGCAATGAAGAGGAGAGGGTCCGCATCACTTCTAGTGGGGGTGAGGTTGGTCGTCTAAATACAGGTGGAGGCACAGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGCTTGTGTCTCTCACGATCCATTGGTGATATGGATGTTGGTGAATTTATTGTCCCCGTACCATACGTAAAGCAAGTGAAGCTTTCCACTGCTGGAGGCAGGATTATTATCAGCAGTGATGGTGTCTGGGATGCTCTAAGTGCAGAAATGGCCCTTGATTGTTGTCGTGGCATGTCAGCAGAGGCTGCAGCATCACATATTGTGAAAGAAGCCTTGCAAGCAAAGGGACTTAGAGATGACACAACTTGCATTGTTATTGATATATTACCCCAGGAGAAGCCACCTCCTTCTGTGCGAACACAAAAGAAACCGGTAAAAGGAATGCTTAAGTCCATTTTTCGCAAAAAGGCCTCTGAATCATCTTATATTGACAAAGAATACCTGGAGCCAGATGTGGTACAGGAACTATACGAGGAAGGGTCTGCTGTGCTTTCAGAGAGGTTAGAAACAAAATATCCACTTTGCAACATGTTCAAGTTGTTCATCTGTGCAGTGTGTCAAGTGGAGATTAAACCTGGGGAGGGTATTTCTGTACACAAGGGTGCGCCTAACCCAGGAAGATTGCGTCCCTGGGATGGACCTTTCCTTTGCTCAAGCTGCCAGGAGAAGAGAGAAGCCATGGAAGGGAAGCGAACAGCAGATAGACTTGGCAGCGGAAGTGACTAG 1287 0.4693 MSARSERRTVPLSVLLKRELANEKIEKPEVVVVHGQASEDKKGEDFTLLKTERQRVVGDGVSTYSVFGLFDGHNGTAAAIYAKENLLNNVLSAIPSDLNRDEWVAALPRALVAGFVKTDKDFQQKAQSSGTTVTFMIIEGWVVTVASVGDSRCILEPSEGGIYYLSADHRLESNEEERVRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKLSTAGGRIIISSDGVWDALSAEMALDCCRGMSAEAAASHIVKEALQAKGLRDDTTCIVIDILPQEKPPPSVRTQKKPVKGMLKSIFRKKASESSYIDKEYLEPDVVQELYEEGSAVLSERLETKYPLCNMFKLFICAVCQVEIKPGEGISVHKGAPNPGRLRPWDGPFLCSSCQEKREAMEGKRTADRLGSGSD 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3805 428 SUPERFAMILY PP2C-like 40 295 IPR036457 -
Ssu1g3805 428 CDD PP2Cc 41 295 IPR001932 -
Ssu1g3805 428 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 2 424 - -
Ssu1g3805 428 SMART PP2C_SIG_2 56 295 IPR001932 -
Ssu1g3805 428 Gene3D - 27 301 IPR036457 -
Ssu1g3805 428 SMART PP2C_4 19 293 IPR001932 -
Ssu1g3805 428 PANTHER ALPHABET, ISOFORM E-RELATED 2 424 - -
Ssu1g3805 428 Pfam Protein phosphatase 2C 59 280 IPR001932 -
Ssu1g3805 428 ProSiteProfiles PPM-type phosphatase domain profile. 29 295 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3805 Ssu-Chr1 95084994 95089155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3805 1 428 PP2C-type Phosphatase Gene Family AT1G47380 77.674 0.0 700
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0235 5 4828437 4832943 Ssu1g3805 1 95084994 95089155 PCT