Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3803 ATGCAAGCGGTGGGTAGAATAATTAGTCAGGGCGTGTACACGGTTTCAGGGCCCTTTCATCCCTTCGGTGGCGCCGTCGATATCGTGGTGGTGGAACAGCAAGATGGGAGTTTCAAGTCCTCTCCCTGGTACGTTCGATTTGGCAAATTCCAAGGGGTTTTGAAGGCGAGGGAAAAGGTGGTTGATATCTGTGTCAATGGGGTCCAAGCTGGTTTCCAAATGCAGCTGGATCATAAGGGGGAAGCTTTCTTTCTCAGGGAAATCGATGCAGAAGAAGAAGCCAATTTAATGTTTCCATCGTCCTCTGGCGATGACGTGGACGATCACTCTCGCTCTCGCTCTCTCGGGTCCAACAGTTGCAACTACGATGGTGGGGAGGTTGTGGGGAAGACTAGTTCTCGCCGGTCCCAGATACTCGGCCTCGTGTTCGGGCGAAGGTCTTTGAAGCGGGGAGAAGATGGTGATGATGGAATTGGGAACAGGGTTGGTTCCTTGGAGCGTGCTGAGATTGCAGCTAACTTGTTGGACCTCAAGTGGTCCACTAATCTCTCCGGGGAACACGGTCAAAATGTTCTTGCTAACTCGTCTGGGGATGGTAACGTGGTGGTGGAGAATGGTGAATTGAACCAGGAGGTTTGTTTTGGTGGTGAGTGTGACTTGAATGGGAAGGAAGTTGTGTACGATATTTCAGGGTCTGACGTGCAAGTTGCGTGTGTGGAGGTGAAGCTTGTAGAAAGGGAATTGAATGGTGAAGAGGTTTCTGGTGTGAGCGCTGTTGATGCGCCGGGCGATGATAGTGATGTTGTTTCTCAGGAGGGCGTTTCAGCTGATGGAGCTTGCCGTGAAACATCAGAGACTTCCAAGCTCGGCGTGGATTGTTCTAGTGAACAAGCTCGTGAGGTGGTGTACCTTGCCGGGACAGGATGTGGAGAAGTCCGTGTCCATGTCCACGATGAAGTCTTGCATGGTGCAACTGTACTGCTATCAGAGGGTACAGAAGCTGAGGAGGTTATTGAGAATGCGGATCTTGGGATGCCAGTATTGGAGTTCTCTGAGCTTCATTCTCAGGTTCAGCAAACAGATTGTTTGGATTCTAATGATAGTACGTATAATGAGGTGGATGTTGAAGTGCAACCAACATCTCCAAAACCTCAAACTGTCAAAATGGGCCTAGGACATTGTTCAAGTGAGAAAGTTGAGCTGAATTGTGTTATCATATCTTCCAGTTACAGCAGCCTGGATGACCAAGCCTTAGATGAGAATAATATGAAGGACAAAGATGTCTCTAGCACATTATCGTCTCCTCTGGACTCTGTTGATGATTGTTTACCAAGAAAAGCATCAAGGAGATCACCATCGCCAGGTTCAGAGgatgaaaatttcctttttagtgACCTTGATGAAAGTGTAATCAATAATCGATTTGAGAGATCATTCTCCCCTGAACATGTAGATAAAGAAGATCATGTTTCTTATGAGAATGACACCGAAAAGTTAACAGCAGTATCCAGTCCCATAGCTATTCATAGAAACGAAGCTGCTGGGGAGGAAATTGGACAGCACTCAGAATCCTTGCCAAATATTTCTTCTAGTAGTGACAGCATGGTCCAACATGATGTTCGTTATCCTTTCAGTCAATCACTGGACTCAAAATCCATATCCTTACCATGGACATTTCCTGGAAAAGATGACTTGGAATGTCTAAAATCAGAAGGAGACAAAGGAAACCAATTATCACATGAGGAGCCAGGTGCCAAGGATTACCATGATTCCGGGGAACTCAAAGGCACTGTTCTGAAGCTTCCCCTTGGAGATCCATCAACACACAACCCTTCCCCTGGTGGAAATTGGAAAATCTGGCCTTTCTCCTTGAGGAGAACAGAATCTAGAAATCCTAGGCTGCCGCCTTCTCCAAGTGATGCCAAAAACACTACTTTTGGTAATCCTCCAGAGAATACAATTAGCACAGATATGAACAAAAATGAGCTCAAACCCAATATAATGAAAAAGACGGTTAGGGAAACAACTCCAACTTCTGAACAGCTAGCCTCGTTGAATCTGAAGGATGGGATGAATACTGTAACCTTCACCTTCTCTACAGCTGTGCTGGGGAATCAGCAGGTTGATGCTCGAATATATTTGTGGAAATGGAACACTCGTATAGTGATCTCAGATGTGGATGGTACAATTACAAGGTCAGATGTTCTTGGTCAGTTCATGCCTTTGGTTGGTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCTATCAAGGAGAATGGTTACCAACTACTTTTTCTCAGTGCTCGTTCAATTTCTCAGGCCTATCTTACACGACAATTCCTACTTAACCTTAGACAGGATGGAAAAGTTTTACCAGATGGTCCTGTTGTTATTTCCCCTGATGGACTTTTTCCCTCTCTATATCGAGAAGTTATTAGGAGGGTTCCCCATGAATTCAAAATTGCATGCTTAGAGGACATCAGGGCACTTTTTCCTTCTGATTGCAATCCATTCTATGCTGGTTTTGGTAATAGGGATACTGATGAAATCAGCTACCTTAAGGTTGGAATTCCCAAAGGAAAAATCTTCATTATTAATCCCAggGGAGAGGTTGTTGTGAACCGTCGTGTTGACACAAAATCATATACTTCTCTGCATGCTCTCGTGAATGGAATGTTCCCCCCTACAAGCTCTTCTGAGCAGGAGGACTTTAATTCATGGAATTTCTGGAAACTACCCCCTCCTGCTATAGATATTTGA 2769 0.4489 MQAVGRIISQGVYTVSGPFHPFGGAVDIVVVEQQDGSFKSSPWYVRFGKFQGVLKAREKVVDICVNGVQAGFQMQLDHKGEAFFLREIDAEEEANLMFPSSSGDDVDDHSRSRSLGSNSCNYDGGEVVGKTSSRRSQILGLVFGRRSLKRGEDGDDGIGNRVGSLERAEIAANLLDLKWSTNLSGEHGQNVLANSSGDGNVVVENGELNQEVCFGGECDLNGKEVVYDISGSDVQVACVEVKLVERELNGEEVSGVSAVDAPGDDSDVVSQEGVSADGACRETSETSKLGVDCSSEQAREVVYLAGTGCGEVRVHVHDEVLHGATVLLSEGTEAEEVIENADLGMPVLEFSELHSQVQQTDCLDSNDSTYNEVDVEVQPTSPKPQTVKMGLGHCSSEKVELNCVIISSSYSSLDDQALDENNMKDKDVSSTLSSPLDSVDDCLPRKASRRSPSPGSEDENFLFSDLDESVINNRFERSFSPEHVDKEDHVSYENDTEKLTAVSSPIAIHRNEAAGEEIGQHSESLPNISSSSDSMVQHDVRYPFSQSLDSKSISLPWTFPGKDDLECLKSEGDKGNQLSHEEPGAKDYHDSGELKGTVLKLPLGDPSTHNPSPGGNWKIWPFSLRRTESRNPRLPPSPSDAKNTTFGNPPENTISTDMNKNELKPNIMKKTVRETTPTSEQLASLNLKDGMNTVTFTFSTAVLGNQQVDARIYLWKWNTRIVISDVDGTITRSDVLGQFMPLVGIDWSQTGVAHLFSAIKENGYQLLFLSARSISQAYLTRQFLLNLRQDGKVLPDGPVVISPDGLFPSLYREVIRRVPHEFKIACLEDIRALFPSDCNPFYAGFGNRDTDEISYLKVGIPKGKIFIINPRGEVVVNRRVDTKSYTSLHALVNGMFPPTSSSEQEDFNSWNFWKLPPPAIDI 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3803 922 SMART lns2 721 877 IPR031315 -
Ssu1g3803 922 MobiDBLite consensus disorder prediction 568 592 - -
Ssu1g3803 922 MobiDBLite consensus disorder prediction 97 117 - -
Ssu1g3803 922 PANTHER GH19076P 1 922 - -
Ssu1g3803 922 MobiDBLite consensus disorder prediction 256 281 - -
Ssu1g3803 922 MobiDBLite consensus disorder prediction 628 658 - -
Ssu1g3803 922 SUPERFAMILY HAD-like 713 863 IPR036412 -
Ssu1g3803 922 MobiDBLite consensus disorder prediction 424 463 - -
Ssu1g3803 922 Pfam LNS2 (Lipin/Ned1/Smp2) 675 897 IPR013209 -
Ssu1g3803 922 MobiDBLite consensus disorder prediction 630 658 - -
Ssu1g3803 922 PANTHER LIPIN 1 922 IPR026058 -
Ssu1g3803 922 Pfam lipin, N-terminal conserved region 1 93 IPR007651 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3803 Ssu-Chr1 95058633 95067105 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0237 5 4874985 4888005 Ssu1g3803 1 95058633 95067105 PCT