Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3800 ATGTCATCACAGGGTAAGACACAAAAAAGCTTCAAAATGAAAGCAGTATTGGAGGAACCTCAAGCAAACCCACATAGGCAAAAGAATAAGGGTGCAAATAATATACAAGTGCCAAGCTTTTTTCGCGAGTTGGGGAAAGGAATGAAGATCGGAATGGTGAACTTAGAAGAAGACCATGTGAGTGAATGGAGCACGCACGGGGAAACGACAATAGTTTATTTTGAGAGGGTATCACAGTTTTTCAACTGGACGGACTTGTTTCCTGAATGGATAGACGAGGAGGAAAAGAATGATGTGCCATCATGCCCGGCGATACCTATGCCAGAGTATGCAGAATATGGAAGCATGAACGCGATCGTGGCTAAGCTGCCATGCAGGTATCCTGAAGAAGGGTGGGGGAAAGACGTTTTTCGGTTGCAAGTTCATCTTATAGTTGCGAATCTAGCGGTGAAGAAGGGGAAGAAGGATTGGAGAGGGAAGACAAAAGTGGTTTTTTGGAGCAAGTGTAGACCAATGCTGGAGCTGTTTCCATGCGACCACTTGGTTAAGCGGAAAGGTGAATGGTGGTATTATGAACCTGAGGTGAAGAGGCTAGAACACAAAGTTTCATTGCCCGTTGGATCCTGCAAGTTGGCCTTGCCTCTCTGGGAACAAGGAATTGACGAGGTGTACGACTTGTCGAAGATTGAGAAAAGTGTGACAAGCAGAAGTAGAATCAAACGCGAAGCGTACGCGACGGTGCTGCACTCCTCGGAAGCGTACGTTTGCGGCGCAATAACACTAGCGCAAAGCCTCCTCCAGACAGGGACCAAACGCGACCTAATCCTCCTGACGGACAAGTCCATCTCCATTCCCAAACGGCAAGCCCTATCCCGAGCGGGGTGGAAGATCCGATTCGTCACCCGGATCCGAAACCCGAAAGCCGAGAAAGGCAGCTACAACGAATACAACTACAGCAAGTTCCGCCTGTGGCAGCTCACGGACTACGACAAAGTCACCTTCATCGACTCCGACATCATCGTGCTCCGCAACCTCGACATCCTCTTCCGCTTCCCGCAGATATCGGCGACGGGGAACGACCATTCCATCTTCAACTCCGGGATAATGGTGATCGAGCCTTCCAACTGCACGTTCCGCATCCTGATGCGCCACCGCGACGACATCGTCTCGTACAACGGGGGGGACCAGGGCTTCCTGAACGAGGTCTTCGTGTGGTGGCACAGGCTGCCCCGGAGGGTGAACTTTCTGAAGAATTTCTGGGCCAACACGACGGCGGAGGCGCGGGTCAAGAACGCGTTGTTCGCGGCGGAGCCGCCGGAGGTGTACGCGATTCACTACCTGGGTTGGAAGCCCTGGCACTGCTACAGGGACTATGACTGCAACTGGGACACCGAGGACCAGAGGGCGTACGCCAGCGACGTGGCGCACCGCAGGTGGTGGAAGGTTCACGACGCCATGGAGGAGGGGTTGCAGAGGTTCTGTAGGTTGACGAAACGGCGTCGGACTGAGTTGAACTGGAAGAGGAGGAAAGCGCGGAAGAAGGGATTGCCCCATGGACATTGGAAAATCAATATCACCGATCCCAGACGGTTTAGCTCTCTCTTGATGGATTAG 1614 0.5254 MSSQGKTQKSFKMKAVLEEPQANPHRQKNKGANNIQVPSFFRELGKGMKIGMVNLEEDHVSEWSTHGETTIVYFERVSQFFNWTDLFPEWIDEEEKNDVPSCPAIPMPEYAEYGSMNAIVAKLPCRYPEEGWGKDVFRLQVHLIVANLAVKKGKKDWRGKTKVVFWSKCRPMLELFPCDHLVKRKGEWWYYEPEVKRLEHKVSLPVGSCKLALPLWEQGIDEVYDLSKIEKSVTSRSRIKREAYATVLHSSEAYVCGAITLAQSLLQTGTKRDLILLTDKSISIPKRQALSRAGWKIRFVTRIRNPKAEKGSYNEYNYSKFRLWQLTDYDKVTFIDSDIIVLRNLDILFRFPQISATGNDHSIFNSGIMVIEPSNCTFRILMRHRDDIVSYNGGDQGFLNEVFVWWHRLPRRVNFLKNFWANTTAEARVKNALFAAEPPEVYAIHYLGWKPWHCYRDYDCNWDTEDQRAYASDVAHRRWWKVHDAMEEGLQRFCRLTKRRRTELNWKRRKARKKGLPHGHWKINITDPRRFSSLLMD 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3800 537 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 239 488 IPR029044 -
Ssu1g3800 537 CDD GT8_Glycogenin 242 486 - -
Ssu1g3800 537 Pfam Glycosyl transferase family 8 247 453 IPR002495 GO:0016757
Ssu1g3800 537 SUPERFAMILY Nucleotide-diphospho-sugar transferases 242 491 IPR029044 -
Ssu1g3800 537 PANTHER GLYCOGENIN SUBFAMILY MEMBER 10 530 - -
Ssu1g3800 537 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 2 10 530 IPR030519 GO:0005794|GO:0009834|GO:0015020|GO:0045492
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3800 Ssu-Chr1 95039259 95043911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3800 13 536 Glycosyltransferase AT4G33330 66.729 0.0 739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0240 5 5025821 5033084 Ssu1g3800 1 95039259 95043911 PCT