Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3799 ATGGAGGATGTTGAAGACAAGATACCCCCTGTCTCCTCTTCAAAAATTGCTGAAGAGACACCACTGGCAGAACTTGTTGGAGACAAGCTACTGTCTGAATCTTCTCCAAAAATTGCTGAGGAGACACCCGTGGCAGAACATGTTGGAGACAAGCTACGATCTGAATCTTCTCCTAAAATTGCTGAAGAGACACCCGTGGCAGAACATGTTGGAGACAAGCTACCATCTGAGTCTTCTCCAAAAATTGCTGAAGAGACACCTGTGGAAGAACATGTTGGAGACAAGCTACCATCTGAATCTTCTCCAAAAATTGCTGTAGAGACACCACTGGCAGAACATGTTGGAGACAAGCTACCATTAGAATCCTCTTCAGAAATTGTTGAAGAGACAACACTAGCAGAACATGTTGGAGACAACCAACCATCTGCATCCTCTACAAAAATTGATGAAGAGACGCCACTGGCAGAACATGTAAGAGACAACTCTGAATCCTCTTCTAAAATTGCTGAAGAGTCACCACTGGCAGAACATGCTGTCAACAAGCTACCCTCTGAATCCACTACAAAAATTGCTGAAGAGATGCCACTGTCAGAACCCCctgaagaaaaaattgaagtgcTAAACCCAATTGACAATCAATCTTCCACAGAAGCTCCAACAATCCCACTTAGTAATGGAAAAATGGAGTCTGGCACTCATTTGCCAGTGGATGAGTTCTCTGAATTCACAGTTTTGCCAAATGCTTCTGATGATCAAACTATAGTTAATTCAGTTTCAAACCCAGATGCTGCAGTTGATGTAACAGAAAAAGGCCAGCAGGAGACTTTAGTTGAAGATTCTGAACCAGGTGCTGTAGAAAATGTCTCTGACAGGCATGAATTGCAGGATGATGTGTCTAATGTCACTGCTGACAGTGATGTTGATAATGAGATTAGACTCTCAGCTTCTTCTTCTGAAACTAATGAACTTATGATGCCTGTGGGAACAGTTGGCTCACTCCCCCTTGCCAAGATGTTTGATGCAAAAAAAGGGCTTATTGATACCACAGCTCCTTTTGAATCTGTCAAGGAAGCTGTTTCCAAGTTTGGAGGAATTGTGGATTGGAAGGCTCATAGGATCCAGACTGTGGAGAGACGCAATCTTGTAGAACAAGAACTTGAAAAGGCACAGGAGGAGATCCCAGAGTACAAAAAACAAGCACAGGCTGCTGAACAGGAGAAAGGTCAAGTACTAAAGGAGTTGGACAGCACAAAGAGACTAATAGAAGAATTAAAACTTAACCTAGAGAGAGCACAAACAGAAGAGCGTCAAGCAAGACAGGACTCAGAACTTGCAAAGCTCAGAGTGGAAGAGATGGAACAGGGTATTGCAGACGAATCAAGTGTTGCAGCCAAGGCACAACTTGAGGTTGCCAAAGCCAGGTATACAGCAGCTGTTTCAGATTTAATAGCTGTGAAAGAGGAGCTGGAAGCATTGCACAAAGAATACGCTTCCTTAGTGACTGATAGAGATGTAGCTATTAAGAAAGCTGAAGAGGCGGTTACTGCATCAAAGGAAGTAGAGAAGTCTGTAGAAGATTTAACTATTGAACTAATTGCTGCAAAAGAGTCATTGGAAACTGCACACGCCGCACATTTGGAAGCAGAGGAACAAAGAATAGGAACAGTCATGGCTAGAGATCAAGATTCTCTCAATTGGGAAAAGGAACTTAAACAGGCAGAAGAAGAGCTCCAGAGACTCAACCAGCAAATTTTGTCTGCGAAGGAACTCAAATCTAAACTGGAAACAGCCTCTGCTTTGCTGATTGATTTGAAAGCTGAATTAACTGCTTATATGGAATCAAAGTTAAAGCAGGAAGGTGATGAAGAAGGAAACTCAAAAGGAGGCCCAGAAGAACAAGCGAAAAAGACACACACTGACATACAAGCAGCAGTGGCATCAGCCAGAAAGGAACTTGAGGAAGTAAATCTTAACATAGAGAAAGCAACTGCCGAGGTTATTTGCTTGAAGGTAGCTGCTACATCATTAAAATCAGAACTTGAACTAGAAAAATCAACTCTTGCTGCAATCAGGCAAAGAGAGGGAATGGCCTCCATTGCAGTTGCATCTCTTGAAGCTGAATTGGAGAAGACCAGATCAGAAATAGCTTTGGTTCAGATGAAGGAGAAAGAAGCTAAAGAGAAAATGACCGAGCTTCCCAAGAAGCTACAACTAACAGCTGAAGAGACTAATCAGGCCAACTTGCTTGCTCAGGCGGCTCGTGAAGAGCTACAGAAAGTAAAGGCAGAAGCAGAGCAAGCCAAGGCTGGAGTAAGTACCTTGGAAAGTAGATTACTTGCAGCTCAAAAGGAGATAGAGGCTGCAAAGGCTTCTGAAAATTTGGCAATAGCAGCAATTAAAGCATTGCAAGAGAGTGAATCAACTAGAAGCAAAAATGAAATGGACCCTTCCACTGGGGTAACACTTTCTCTGGAGGAGTACTATGAGCTTAGCAAACGAGCTCATGAGGCGGAAGAGCGAGCCAGTATGAGGGTTGCAGCTGCTAATTCTGAAATTGATAAAGCTAAGGAGTCTGAATTGAAAGCCTTTGAAAAGTTGGACGAAGTGAATAGAGAGATAGCTGCTAGAAGAGAATCTTTGAAAATAGCAATGGAAAAGGCTGAGAAGGCAAAGGAAGGTAAATTGGGTGTAGAACAAGAATTGAGAAAGTGGAGAGCTGAAAATGAACAACGAAGAAAGGCTGGCGAGTCTGGCCAAGGAGTGGTAAACCAGAGTAAAAGCCCTAGGGGTAGTTTTGAGGGGAGTCAGGAAGCAAATAACATTGACCGCACTAGTGATGCAGCTAATCCTGCACATTTCATGTCGAGTCCAAAGGCTAATGTGCATGCAGACAATGATGAAAGTGGATTATCCCCAGAATCAAAAcatggaaaaaagaagaagaagtcaaTTTTCCCGAGGGTTTTGATGTTCTTTGCTAGAAGAAAAACACATTCAACCAAGTCAGGGTAA 3012 0.423 MEDVEDKIPPVSSSKIAEETPLAELVGDKLLSESSPKIAEETPVAEHVGDKLRSESSPKIAEETPVAEHVGDKLPSESSPKIAEETPVEEHVGDKLPSESSPKIAVETPLAEHVGDKLPLESSSEIVEETTLAEHVGDNQPSASSTKIDEETPLAEHVRDNSESSSKIAEESPLAEHAVNKLPSESTTKIAEEMPLSEPPEEKIEVLNPIDNQSSTEAPTIPLSNGKMESGTHLPVDEFSEFTVLPNASDDQTIVNSVSNPDAAVDVTEKGQQETLVEDSEPGAVENVSDRHELQDDVSNVTADSDVDNEIRLSASSSETNELMMPVGTVGSLPLAKMFDAKKGLIDTTAPFESVKEAVSKFGGIVDWKAHRIQTVERRNLVEQELEKAQEEIPEYKKQAQAAEQEKGQVLKELDSTKRLIEELKLNLERAQTEERQARQDSELAKLRVEEMEQGIADESSVAAKAQLEVAKARYTAAVSDLIAVKEELEALHKEYASLVTDRDVAIKKAEEAVTASKEVEKSVEDLTIELIAAKESLETAHAAHLEAEEQRIGTVMARDQDSLNWEKELKQAEEELQRLNQQILSAKELKSKLETASALLIDLKAELTAYMESKLKQEGDEEGNSKGGPEEQAKKTHTDIQAAVASARKELEEVNLNIEKATAEVICLKVAATSLKSELELEKSTLAAIRQREGMASIAVASLEAELEKTRSEIALVQMKEKEAKEKMTELPKKLQLTAEETNQANLLAQAAREELQKVKAEAEQAKAGVSTLESRLLAAQKEIEAAKASENLAIAAIKALQESESTRSKNEMDPSTGVTLSLEEYYELSKRAHEAEERASMRVAAANSEIDKAKESELKAFEKLDEVNREIAARRESLKIAMEKAEKAKEGKLGVEQELRKWRAENEQRRKAGESGQGVVNQSKSPRGSFEGSQEANNIDRTSDAANPAHFMSSPKANVHADNDESGLSPESKHGKKKKKSIFPRVLMFFARRKTHSTKSG 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3799 1003 PANTHER WEB FAMILY PROTEIN-RELATED 320 998 - -
Ssu1g3799 1003 Coils Coil 563 607 - -
Ssu1g3799 1003 Coils Coil 838 858 - -
Ssu1g3799 1003 Coils Coil 372 450 - -
Ssu1g3799 1003 MobiDBLite consensus disorder prediction 65 97 - -
Ssu1g3799 1003 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 320 998 - -
Ssu1g3799 1003 MobiDBLite consensus disorder prediction 617 638 - -
Ssu1g3799 1003 MobiDBLite consensus disorder prediction 906 1003 - -
Ssu1g3799 1003 MobiDBLite consensus disorder prediction 1 233 - -
Ssu1g3799 1003 Pfam Weak chloroplast movement under blue light 343 911 IPR008545 -
Ssu1g3799 1003 Coils Coil 866 907 - -
Ssu1g3799 1003 MobiDBLite consensus disorder prediction 150 166 - -
Ssu1g3799 1003 MobiDBLite consensus disorder prediction 208 227 - -
Ssu1g3799 1003 Coils Coil 701 728 - -
Ssu1g3799 1003 MobiDBLite consensus disorder prediction 917 951 - -
Ssu1g3799 1003 MobiDBLite consensus disorder prediction 43 58 - -
Ssu1g3799 1003 MobiDBLite consensus disorder prediction 124 149 - -
Ssu1g3799 1003 Coils Coil 638 665 - -
Ssu1g3799 1003 MobiDBLite consensus disorder prediction 617 642 - -
Ssu1g3799 1003 Coils Coil 743 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3799 Ssu-Chr1 95022943 95027370 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0241 5 5048395 5052606 Ssu1g3799 1 95022943 95027370 PCT