Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu1g3785 | atGGCTCTTCTTCTAGACAACTGTGAAGGCATTTTACTCTCTTTGGACTCACACAAATCGATGCCAGCTCCTTTCCTCACCAAGACATACCAACTGGTGGACGATCCCACCACAGATCACATAGTTTCTTGGGGCGAAGACGACACCACCTTCGTTGTTTGGCGTCCCCCGGAGTTCGCAAGGGACCTTCTCCCCAACTACTTCAAACACAACAACTTCTCAAGCTTCGTTCGCCAACTCAACACCTATGGTTTTAGAAAGATCGTGCCAGACCGGTGGGAGTTCGCTAACGAATTCTTCAAGAAGGGAGAGAAACATTTGCTGTGCGAGATCCATAGAAGAAAAACGGCTCAGCCTCAACAAGGAAGCATGAATCAGCATCACCATCACCACAACCATGCACTGGGAGTCAACGTTGGCGTTCCCGCTTTCTTTCCCTTCTCCGGCAGAGTCAGCATCTCTCCCTCCAACGACTCCGACGAGCAAGCCAATTGGTGCGACTCTCCCCCACGTGGCGCCGCCTCATTGGTGAACGGTGCAGCCAACTACAACACTTCCGTCACCGCGCTTTCAGAGGACAACGAGAGACTCAGGCGTAGCAACAACATGCTCATGTCCGAGCTCGCACACATGAAGAAGCTCTATAATGACATCATCTACTTCGTTCAGAACCATGTCAAGCCGGTGGCTCCAAGCAACTCTTACTCTTCTTCTTTGCTCCTATGCAATACACCTGCTGCTACTCCTATAAGTAGTGGCAATGTTTCGATGATGCAAAGGCCAATGAACCAACTTCTGGGGTATTATTCTTGTAACCCTAAGCCAGGAACTACTCAACCTCAACCTCAACCTCAGAACTATGTTGTGAACTCTCCCACCAACACATCAAGGAGTTCTATAACGATTGTTGAAGGGCCTAACAGTAACATAAACAGCTGCAAGACAAAGCTTTTTGGGGTGTCGCTGCAGTCAAAGAAAAGGGTGCACCCGGATTATGGATCTAATTCGGAGACCAACAAGGCTCGTTTGGTTTTGGAAAAGGATGACTTGGGTTTGAATCTCATGCCTCCGTCCACTTGTTAG | 1083 | 0.4894 | MALLLDNCEGILLSLDSHKSMPAPFLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQGSMNQHHHHHNHALGVNVGVPAFFPFSGRVSISPSNDSDEQANWCDSPPRGAASLVNGAANYNTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSLLLCNTPAATPISSGNVSMMQRPMNQLLGYYSCNPKPGTTQPQPQPQNYVVNSPTNTSRSSITIVEGPNSNINSCKTKLFGVSLQSKKRVHPDYGSNSETNKARLVLEKDDLGLNLMPPSTC | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu1g3785 | 360 | ProSitePatterns | HSF-type DNA-binding domain signature. | 64 | 88 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
| Ssu1g3785 | 360 | PRINTS | Heat shock factor (HSF) domain signature | 25 | 48 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
| Ssu1g3785 | 360 | PRINTS | Heat shock factor (HSF) domain signature | 63 | 75 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
| Ssu1g3785 | 360 | PRINTS | Heat shock factor (HSF) domain signature | 76 | 88 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
| Ssu1g3785 | 360 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 288 | 359 | IPR027725 | - | |
| Ssu1g3785 | 360 | SUPERFAMILY | "Winged helix" DNA-binding domain | 22 | 114 | IPR036390 | - | |
| Ssu1g3785 | 360 | SMART | hsfneu3 | 21 | 114 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
| Ssu1g3785 | 360 | Pfam | HSF-type DNA-binding | 25 | 114 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
| Ssu1g3785 | 360 | MobiDBLite | consensus disorder prediction | 273 | 303 | - | - | |
| Ssu1g3785 | 360 | PANTHER | BNAC06G00310D PROTEIN | 288 | 359 | - | - | |
| Ssu1g3785 | 360 | PANTHER | BNAC06G00310D PROTEIN | 12 | 235 | - | - | |
| Ssu1g3785 | 360 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 12 | 235 | IPR027725 | - | |
| Ssu1g3785 | 360 | Gene3D | - | 17 | 116 | IPR036388 | - | |
| Ssu1g3785 | 360 | Coils | Coil | 187 | 207 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu1g3785 | Ssu-Chr1 | 94859439 | 94860633 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu1g3785 | 1 | 359 | HSF | AT1G46264 | 55.556 | 2.10e-123 | 357 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | HSF | Ssu1g3785 | HSF_DNA-bind | 3.1e-32 | CL0123 |
Event-related genes