Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3784 ATGCAAGGGCAAAGAGGTACAATTGGTTCAATGCCTGAAACATTAGAATTTGATTGTGGATCTACATCAAATAATTCTACAGTGGATCAGCAGATTTGTTGGAATAATGTGAATCCTGCAGAAAATCAAATACCTGATTATATACTTTCTCCTGGTGATATGAACTCATCTTATGTGAATTCTATTAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGCGAGCCAAGTTCCGGTAATACACCAAATGAGATTAACAATAATGAGCAAAAAAGAGAACTTGGATGGTCATCTACCATTACTACTGGTGCATTGGCTGGTCCAAGACTAGAAGAAAGGCGCCTTGAACCAACCAATGCTCTTTCACTGGACAATGTCGATACAGGTCCTATGTACATGCGTAGCCCCAATTCTCGTTTGATGTCCCAGAATCTGAACTTAAATGCAGGTTTAGCAGACAGTGGCAGTGATAATAGTCAACATCTAGGGCTCCCTAACTTACACAAGTCTAGTGGGTCAGCAAATGAGTGTATACCATCTAATGTTGGATCTGGTTCTTTTCTGCTCCCTTCTGGAAACAATGGCTTCCTGGTAGAAGATACTGATGGTAGGCCAGGTTGTTCTCTTGATACTCGACATGTCTCTTGTAAAAGAAAGGCTGTTGAAGGAAACACTGGACAATCTTCAGATGCTGGAAGTTCTAGCTACAGTCAGCATACAGATGGTAGTACTTGGCACACTATTCCTACTAAGGATAATGCTGGAAGCAGTTCCAGAAGATCTATTTCCTCAGAACAGGTAAACGCAAGACTTGGCCTGGGTATGGGGGATGAAGCATCTGAAGATGTTCCTGATTCAAACATTGCAGGAAGCTCAGAAAGCTTTCACAGGAATTTCCGTTTGAGGTTAAATCCTTCAAACCAACAAAATTCTGTTCCTCCCACTGCATTCTCAACAGGAAGCATGATTAGGCATTCTAGTGTTTCTTCATCCCCTCAAGTATCACAAAGGTTTCATTCTGTTAATAATTCTCTGAACTTTACGTCAGCACCGCCGATAGATAATGTGGTTCCTCAAAGCCAGCCACTTGTAATTCATGTTCCAGCTTTGCCAAGGAATAGGCAATCATTTAGATGGAGTGGTGGTTCTAGCTCACGAAACATCCAGTCATCAAACTCAATGAGTGCAGAGAGGGATCAAGAGGATGCAAGCTCAAGAAGAATGTCtagaaatattttagaacatccAGTCTTTGTACCTGCAACTGATTTAAGAAATTTGGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGAAAATTTAAGTATTCCAGGAAATGTTGCTTCTTCATCACGGACTGGATCAAATCCAGCTACCAATCCCTCATCTGCCTCAACTTGGGTTTCTCGTCCTAATCCTCCGCAGCATCCACGGAGGTTATCTGAATATGTCCGCCGGTCCTTGTTTTCTCCTGGTTCTGATGCTGTTGGAAGTCCAAGCAATAATTATTCTTCCTTGCGCTCTGGTCTTTCTACATCTGAACCAAGGGCATTATCATCTGGGAGTGGGGTAAACCTGAGATCATCTTCATGGTTGGAGAGGCAAGGAGATAGCGACTTTGGAATTCCTTATTCACTACGTACTTTGGCTGTTGCAAGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTGTTGGGCCTTATGCGTAGAGGTGGGAACGTGCGATTCGAGGATGTTGTGATCCTTGATCATCAATCGTTTCTTTCTGGAATAGCTGATGTTCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTGTTGGATCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCGTATTGAAACACCTTAAACAGAGAAAGCACTCGGTCGAAAAAGAATCTCAGATTGATGCAGAACCTTGTTGTGTTTGTCAGGAGGATTATGGTGATGGAGATGATATTGGAACGCTTGATTGTGGCCATGATTTCCATAGCAACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACGGGCTTGAAAACATGA 2121 0.4187 MQGQRGTIGSMPETLEFDCGSTSNNSTVDQQICWNNVNPAENQIPDYILSPGDMNSSYVNSINHEWQNLSGWSLGEPSSGNTPNEINNNEQKRELGWSSTITTGALAGPRLEERRLEPTNALSLDNVDTGPMYMRSPNSRLMSQNLNLNAGLADSGSDNSQHLGLPNLHKSSGSANECIPSNVGSGSFLLPSGNNGFLVEDTDGRPGCSLDTRHVSCKRKAVEGNTGQSSDAGSSSYSQHTDGSTWHTIPTKDNAGSSSRRSISSEQVNARLGLGMGDEASEDVPDSNIAGSSESFHRNFRLRLNPSNQQNSVPPTAFSTGSMIRHSSVSSSPQVSQRFHSVNNSLNFTSAPPIDNVVPQSQPLVIHVPALPRNRQSFRWSGGSSSRNIQSSNSMSAERDQEDASSRRMSRNILEHPVFVPATDLRNLVQNPTVRASSSSSENLSIPGNVASSSRTGSNPATNPSSASTWVSRPNPPQHPRRLSEYVRRSLFSPGSDAVGSPSNNYSSLRSGLSTSEPRALSSGSGVNLRSSSWLERQGDSDFGIPYSLRTLAVASEGSSRLVSELRNVLGLMRRGGNVRFEDVVILDHQSFLSGIADVHDRHRDMRLDVDNMSYEELLDLEERIGNVSTGLSEETVLKHLKQRKHSVEKESQIDAEPCCVCQEDYGDGDDIGTLDCGHDFHSNCIKQWLMHKNLCPICKTTGLKT 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3784 706 Pfam Ring finger domain 659 700 IPR001841 -
Ssu1g3784 706 MobiDBLite consensus disorder prediction 432 481 - -
Ssu1g3784 706 MobiDBLite consensus disorder prediction 152 173 - -
Ssu1g3784 706 MobiDBLite consensus disorder prediction 305 331 - -
Ssu1g3784 706 MobiDBLite consensus disorder prediction 377 407 - -
Ssu1g3784 706 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 705 - -
Ssu1g3784 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 703 IPR013083 -
Ssu1g3784 706 MobiDBLite consensus disorder prediction 222 265 - -
Ssu1g3784 706 CDD RING-H2_TTC3 658 700 - -
Ssu1g3784 706 MobiDBLite consensus disorder prediction 73 95 - -
Ssu1g3784 706 SMART ring_2 659 699 IPR001841 -
Ssu1g3784 706 MobiDBLite consensus disorder prediction 493 527 - -
Ssu1g3784 706 MobiDBLite consensus disorder prediction 496 527 - -
Ssu1g3784 706 MobiDBLite consensus disorder prediction 221 265 - -
Ssu1g3784 706 MobiDBLite consensus disorder prediction 432 475 - -
Ssu1g3784 706 SUPERFAMILY RING/U-box 645 702 - -
Ssu1g3784 706 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g3784 706 ProSiteProfiles Zinc finger RING-type profile. 659 700 IPR001841 -
Ssu1g3784 706 MobiDBLite consensus disorder prediction 377 399 - -
Ssu1g3784 706 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 705 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3784 Ssu-Chr1 94820877 94827763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3784 1 706 C3H Transcription Factor Family AT2G15530 33.376 2.79e-80 268
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0266 5 5555720 5559786 Ssu1g3784 1 94820877 94827763 PCT