Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3760 atgaaaatgggtACTAACAGATCTGCCATGGCGACGATCCTCATCGTGTTCACGGTCTTGATAGTGTCATCGGCGTTAGACATGTCGATTATCTCGTACGACACAACACAGGCGGACAAGTCAGCGTGGAGGAGCGATAAGGAGGTAATGAGTGTATACGAGCAGTGGCTTGTGGAGCATGGCAAGGTGTACAACGCCCTCTCCGAGAAGGAGAAGAGATTCCAAATCTTCAAAGACAACCTCAAGTTTATCGACGAGCACAACGCTGAGAACCGGACGTACAAGGTTGGACTGAACCGGTTCGCTGATCTTAGCAACGAGGAGTACCGGGCCAACTACCTGGGAACTAAGATTGACTCCAGCAGAATGACGGCCAAGCTCAGCAACCGTTACGCGCCGCGCGTCGGCGACAAATTGCCGAAATCTGTTGATTGGAGGAAGGAAGGTGCTGTCGTCAGAGTCAAAGACCAAGGAAATTGCGGGAGTTGTTGGGCATTCTCAACAATTGCTGCAGTGGAAGGGATTAACAAGATAGTTACAGGCGATCTAATTGCATTGTCAGAGCAAGAACTGGTGGATTGTGACAGAACAATCAATGCAGGATGCGATGGTGGACTTATGGAGTACGCCTTTGAGTTCATTATCAATAATGGTGGCATTGACACCGAAGAGGATTACCCCTATCGAGGTGTTGATGGTATATGTGATGAATATAAGAAAAATGCTAGAGCTGTTACAATTGATGATTATGAACGTGTTCCTGCCTATGATGAGTTAGCCTTGAAAAATGCAGTAGCAAATCAGCCAGTGAGCGTTGCCATTGAAGCAGCTGGCAGAGAATTTCAGTTTTATGTATCAGGTATATTCACAGGAAGATGTGGGACAACATTAGACCATGGTGTTACAGCTGTTGGGTACGGAACAGAACATGGAATTGACTATTGGATTGTGAAGAACTCATGGGGTAAGAGCTGGGGAGAGGCAGGTTATATTAGAATGGAACGTAATATAGCAACAGTTAGCGCCGGAAAGTGTGGAATTGCAAGTCTGGCATCCTATCCCATAAAGAGGGGCCAACATCCCCCAAATCCTGGACCATCTCCTCCTTCACCAGTTAAGCCACCATATGTTTGTGATAATTACTATAGTTGTCCTAAAAGCAGTACTTGCTGTTGTATTTTCAAGAATGGAAATTATTGTTTTGGGTGGGGATGTTGTCCTCTTGAAGCTGCTACTTGCTGTGAAGATCACTTCACCTGTTGCCCGCATGACTATCCCATTTGTAACATTTATGCAGGGACCTGTCATAAGAGTAAGAATAACCCATTTGGAGTGAAGGCAATGAAGAGAACTCCAGCTAAATCCCACTGGGAGTTTACGGGTAGGAGCAAGATAAACTTTGCTTAA 1407 0.4534 MKMGTNRSAMATILIVFTVLIVSSALDMSIISYDTTQADKSAWRSDKEVMSVYEQWLVEHGKVYNALSEKEKRFQIFKDNLKFIDEHNAENRTYKVGLNRFADLSNEEYRANYLGTKIDSSRMTAKLSNRYAPRVGDKLPKSVDWRKEGAVVRVKDQGNCGSCWAFSTIAAVEGINKIVTGDLIALSEQELVDCDRTINAGCDGGLMEYAFEFIINNGGIDTEEDYPYRGVDGICDEYKKNARAVTIDDYERVPAYDELALKNAVANQPVSVAIEAAGREFQFYVSGIFTGRCGTTLDHGVTAVGYGTEHGIDYWIVKNSWGKSWGEAGYIRMERNIATVSAGKCGIASLASYPIKRGQHPPNPGPSPPSPVKPPYVCDNYYSCPKSSTCCCIFKNGNYCFGWGCCPLEAATCCEDHFTCCPHDYPICNIYAGTCHKSKNNPFGVKAMKRTPAKSHWEFTGRSKINFA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3760 468 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 33 384 - -
Ssu1g3760 468 SUPERFAMILY Granulin repeat 375 409 - -
Ssu1g3760 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 297 307 IPR025660 -
Ssu1g3760 468 SMART GRAN_2 378 435 IPR000118 -
Ssu1g3760 468 Pfam Cathepsin propeptide inhibitor domain (I29) 53 109 IPR013201 -
Ssu1g3760 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 157 168 IPR000169 -
Ssu1g3760 468 Pfam Papain family cysteine protease 139 355 IPR000668 GO:0006508|GO:0008234
Ssu1g3760 468 SUPERFAMILY Cysteine proteinases 45 355 IPR038765 -
Ssu1g3760 468 SMART Inhibitor_I29_2 53 109 IPR013201 -
Ssu1g3760 468 SMART pept_c1 139 355 IPR000668 GO:0006508|GO:0008234
Ssu1g3760 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 314 333 IPR025661 -
Ssu1g3760 468 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Ssu1g3760 468 PRINTS Papain cysteine protease (C1) family signature 299 309 IPR000668 GO:0006508|GO:0008234
Ssu1g3760 468 PRINTS Papain cysteine protease (C1) family signature 314 320 IPR000668 GO:0006508|GO:0008234
Ssu1g3760 468 Gene3D Cysteine proteinases 32 357 - -
Ssu1g3760 468 Gene3D Granulin 375 438 IPR037277 -
Ssu1g3760 468 CDD Peptidase_C1A 140 354 IPR039417 -
Ssu1g3760 468 Pfam Granulin 389 436 IPR000118 -
Ssu1g3760 468 PANTHER CYSTEINE PROTEASE 33 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3760 Ssu-Chr1 94377162 94383773 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0283 5 5964152 5968445 Ssu1g3760 1 94377162 94383773 PCT