Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3754 ATGGCCTCTCCTCTTCTTCTAAGACAGGCTCTGCTCCTCCGCGTTTGCGTCCATAACTACCAACGGTTTACCGCCGGAGACGTCGCCGCGCGTCACCGGCTATGGTGCAGCGCCGCCGCCAACCTGCCGTCGGACGAAGCGGACGAGAAAACAAGCTCCGGCAGCATTAGCAACAGCTCCAATGCACGGAAAGCTCAGTACCCGTCCAGTCACGCGCGGTGGGAGGACGACCACGATTACCGGAAATGGAAGGACAAAGAAGAGGAGATTCTGAGGGACATTGAGCCTATCGTTTTGCTCGCCAAGGACATTCTACACTCACGAAGGTACATGGATGGAGAGCGATTGAGTGTGGAGGACGAGAAAGCTGTAGTTGAGAAGCTCCTTGCGTACCATCCACAATCTGAAGATAAGATTGGATGCGGCCTTGAATCCATTATGGTTGACCGTCATCCCCAATATCGACAATCAAGGTGTCTTTTTGTTGTAAGAACTGATGGTGGCTGGATTGATTTCTCCTATCAGAAGTGCCTTCGGGAATACATTAGAGATAAGTACCCTACTTATGCAGAAAGGTTTATTCGACAACATTTTAAGCGTGGGAGTGGTTAA 612 0.5098 MASPLLLRQALLLRVCVHNYQRFTAGDVAARHRLWCSAAANLPSDEADEKTSSGSISNSSNARKAQYPSSHARWEDDHDYRKWKDKEEEILRDIEPIVLLAKDILHSRRYMDGERLSVEDEKAVVEKLLAYHPQSEDKIGCGLESIMVDRHPQYRQSRCLFVVRTDGGWIDFSYQKCLREYIRDKYPTYAERFIRQHFKRGSG 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3754 203 MobiDBLite consensus disorder prediction 46 67 - -
Ssu1g3754 203 Pfam Protein of unknown function (DUF3223) 102 178 - -
Ssu1g3754 203 Gene3D - 92 185 - -
Ssu1g3754 203 MobiDBLite consensus disorder prediction 45 73 - -
Ssu1g3754 203 PANTHER - 1 201 IPR044673 -
Ssu1g3754 203 PANTHER DCL PROTEIN (DUF3223) 1 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3754 Ssu-Chr1 94254342 94260640 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0287 5 6032193 6043399 Ssu1g3754 1 94254342 94260640 PCT