Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3753 ATGGCTAACCACCATCATGAAGCACATGACACCAACCAAAAATCCCTTTTGGACACCCTATACTGCTCCGAAGAGCACTGGGAGGAAAACGTAGGGGAAGGTGAATTAGACCAAGCAGAGGACGAGTATAGTGATTACCTAAGCGCTAATAACACTAGTACTAGTAGCACAATAATAAACTCCTCCCCTCCTTTGTTGCTCGAAAGCGACATGTTTTGGGACGAAGAAGAGTTGACATCGCTGCTGGGGAAAGAACAACACAACCCACTGAGCACCTGCCTCCAAGGCAACCCCTCGTTGGGGGGTGCTCGCAGAGAAGCCGTGGAGTGGATGCTGAGAGTGAACGCCCACTACTCCTTCTCTGCTCTCACCGCTGTTCTCGCGGTCAACTACTTTGACCGGTTCCTCTTCAGCTTCCGCTTTCAGAATGGGAAGCCATGGATGACTCAGCTCGCTGCTGTCGCTTGCCTCTCCCTCGCTGCCAAAGTGGAGGAGACACGAGTTCCCCTTCTCCTAGACCTTCAAGTGGAGGAGAGTAGATACTTGTTCGAAGCCAAAACGATTAAAAGGATGGAGATTTTGATGAACCCGGTAACCCCTCTCTCGTTTCTTGATTACATCACAAGAAGACTCGGATTGAAGGATCATCTCTGCTGGGAGTTCCTCAGGAGGTGCGAAGGTGTTCTTCTCTCTGTCCTTGGAGATTCGAGGTTTATGGGTTATCTACCCTCTCTGTTGGCAACTGCTACGATGATGCACGTTGTCAAAAGCGTGGAGCCTCGTCTAGGAGCTGAATACCAGAGCCAGCTCTTTGGTATTCTCGGAATCGACAAGGAGAAGGTGAATGAATGTTGCAAGCTGATGTTGGAATTGTGGTCGGTGTACGATCAGGGGAAGCAATGCATGAAACGCAAGTTTGGGTCCGTTCCTGGAAGCCCAAACGGCGTGATGGATGTGTCGTTTAGCTGTGATAGTTCCAATGACTCGTGGGCCGTGGCTGCTTCTGTGTCTTCCTCACCGGAACCTTTGTCCAAGAAGAATAGGACTCAAGAGCAGCAGCTTCCACTTAACCGTTCCAACTCAGATTTTCGCGCGAGCTAG 1101 0.5041 MANHHHEAHDTNQKSLLDTLYCSEEHWEENVGEGELDQAEDEYSDYLSANNTSTSSTIINSSPPLLLESDMFWDEEELTSLLGKEQHNPLSTCLQGNPSLGGARREAVEWMLRVNAHYSFSALTAVLAVNYFDRFLFSFRFQNGKPWMTQLAAVACLSLAAKVEETRVPLLLDLQVEESRYLFEAKTIKRMEILMNPVTPLSFLDYITRRLGLKDHLCWEFLRRCEGVLLSVLGDSRFMGYLPSLLATATMMHVVKSVEPRLGAEYQSQLFGILGIDKEKVNECCKLMLELWSVYDQGKQCMKRKFGSVPGSPNGVMDVSFSCDSSNDSWAVAASVSSSPEPLSKKNRTQEQQLPLNRSNSDFRAS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3753 366 Gene3D - 197 286 - -
Ssu1g3753 366 ProSitePatterns Cyclins signature. 104 135 IPR006671 -
Ssu1g3753 366 Gene3D - 100 196 - -
Ssu1g3753 366 PANTHER CYCLIN D3.1 PROTEIN 13 348 - -
Ssu1g3753 366 Pfam Cyclin, N-terminal domain 96 194 IPR006671 -
Ssu1g3753 366 SMART cyclin_7 109 197 IPR013763 -
Ssu1g3753 366 SMART cyclin_7 202 290 IPR013763 -
Ssu1g3753 366 PANTHER CYCLINS 13 348 IPR039361 -
Ssu1g3753 366 CDD CYCLIN 104 195 IPR013763 -
Ssu1g3753 366 SUPERFAMILY Cyclin-like 72 195 IPR036915 -
Ssu1g3753 366 SMART Cyclin_C_2 198 325 IPR004367 -
Ssu1g3753 366 Pfam Cyclin, C-terminal domain 198 322 IPR004367 -
Ssu1g3753 366 SUPERFAMILY Cyclin-like 199 306 IPR036915 -
Ssu1g3753 366 MobiDBLite consensus disorder prediction 334 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3753 Ssu-Chr1 94230116 94231651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3753 5 364 Core Cell Cycle Gene Families AT5G67260 47.781 7.23e-93 281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0288 5 6083306 6085008 Ssu1g3753 1 94230116 94231651 PCT