Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3750 atGGCTTCGGCGAATAAAGACGTGGATCGGATAAAAGGGCCATGGAGCCCTGAAGAGGACGAAGCGTTGCGGAGGTTGGTTCAGACTTACGGGCCTAGAAACTGGTCCGTTATAAGCAAATCCATTCCGGGCCGGTCCGGGAAGTCGTGCCGGTTGCGGTGGTGCAACCAGCTGTCACCGGAGGTGGAGCACCGGCCTTTCACGGCGGAGGAGGACGAGACGATCGTGAAGGCGCACGCCAGGTTCGGGAACAGGTGGGCCACCATCGCTCGCTTCCTCAATGGCCGCACCGACAACGCCATCAAGAACCATTGGAATTCCACACTCAAGAGGAAATGCTCCGAACCTCTCTCCGAGCCTCGGCCTCGGAAAAGATCCGCCACCGGTTCGGGTGGTCCATCATCCGGGTCCGATTTGAGCGATTCGGGTTTACCCGCTACGGTGTCTCCCACACCCATCCAGGTTTACAAACCTCTTGCGAGGAGCGTGAGCGTGACCCTCGCTCCCTCTACGGAAACTGCGTCTTCCGTAACTGACCCAGCCACGTCACTGAGTTTGTCTTTACCCGGATCCGATTCGTGCGATGGGTCTAACAACGGGCCTGGGCCGAACCAGGGGTCCAGTTGTGACCCGGCCCAGGAGGTCATGCTTAGTTCCGAGAAGCAGTTGTTCAGTGCGGAGTTGTTGAAGGCAATGCAAGAGATGATAAGAGTGGAAGTGAGGAATTACATGTCTGGACTGGAACGTAATGGTGTGTGTATGCAAACCGAAGCCATTAGGAACGCGGTTGTGAAGATAATGGGAATCGGCAGGGTCGAATAG 822 0.5669 MASANKDVDRIKGPWSPEEDEALRRLVQTYGPRNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRPFTAEEDETIVKAHARFGNRWATIARFLNGRTDNAIKNHWNSTLKRKCSEPLSEPRPRKRSATGSGGPSSGSDLSDSGLPATVSPTPIQVYKPLARSVSVTLAPSTETASSVTDPATSLSLSLPGSDSCDGSNNGPGPNQGSSCDPAQEVMLSSEKQLFSAELLKAMQEMIRVEVRNYMSGLERNGVCMQTEAIRNAVVKIMGIGRVE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3750 273 MobiDBLite consensus disorder prediction 171 211 - -
Ssu1g3750 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Ssu1g3750 273 MobiDBLite consensus disorder prediction 128 149 - -
Ssu1g3750 273 MobiDBLite consensus disorder prediction 111 149 - -
Ssu1g3750 273 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Ssu1g3750 273 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 9 241 - -
Ssu1g3750 273 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Ssu1g3750 273 CDD SANT 14 56 IPR001005 -
Ssu1g3750 273 PANTHER MYB PROTEIN-RELATED 9 241 - -
Ssu1g3750 273 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Ssu1g3750 273 SMART sant 11 60 IPR001005 -
Ssu1g3750 273 SMART sant 63 111 IPR001005 -
Ssu1g3750 273 CDD SANT 66 109 IPR001005 -
Ssu1g3750 273 Gene3D - 65 129 - -
Ssu1g3750 273 Gene3D - 11 63 - -
Ssu1g3750 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Ssu1g3750 273 Pfam Myb-like DNA-binding domain 15 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3750 Ssu-Chr1 94060894 94061715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3750 6 273 MYB Transcription Factor Family AT4G37260 47.401 2.70e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g3750 Myb_DNA-bind_6 6.2e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0292 5 6223459 6224265 Ssu1g3750 1 94060894 94061715 PCT