Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3736 ATGGAGACACGCGCCGCAAACAGAAGGGCCAACCAAGACCAAGACCAAGACCAAAACGAACCCCTCAAGAAACAACGAGTCGTGTTGGGTGAACTTCCCAACTTGACCAATCTCATCGATCCTCAGCCCAAACGCACGAATAAAGCAGCGGTCACCAAGAAGACCCTGTCTTCGGCGAAGAAAGCAGTTGATAATGAGGTTGAAGCAGAATCAAACATCAGTTCCCCTTTTGTTTCCGACATCTATGACTATCTTCGCACAATGGAGGTGGAGAAGAAGCGAAGGCCGATGGTTGATTACATTGAGAAAGTTCAGAGAGATGTTACAATAACCATGAGAGGGATATTGGTGGATTGGTTGGTAGAAGTTGCTGAGGAATATAAGCTTCTCTCTGATACCCTTCATCTCTCTGTTTCCTATATTGATAGGGTTTTGTCTATTGTTCCTGTGAGTGAACCGAAACTTCACTTGCTGGGTGTTTCGTCCATGCTTGTTGCATCGAAGTATGAGGAAATTAGCCCGCCGTACGTGGAAGAATTCTGCCTTATCACTGACAACACGTACCACAAAGCAGAGGTGGTAAGTATGGAAGCTGACATACTTAAGGCCCTGAATTTTGAATTGGGCAACCCCACTGTTAAGACCTTTTTAAGGAGGTATACTGGAATTGCTTGTGAGAACAAGGCCTCAAGTTTGCAATTTGAGTTTATGAGTTATTATCTTGCCGAGCTAAGTTTGTTGGACTATTATTGTTTGAAGTTCTTACCTTCTTTAGTGGCTGCGTCTGTTGTATTTCTTGCTAGATTTATCATTTGGCCTGATCTGCAAACTTGGACTTCGGCCCTGTATGAATGCTCTCGGTATAAATCAGCTTACTTAAAGGAGTGTGTTCTCGTCTTACATGACTTGTACATGGCAAGGAAGGGAGGGTCTTTCCAAGCTATTCGGGAGAAATACAGGCAGCACAAGTTTAAGTACGTAGCAAACCTGCCTGCGCCACCACATTTACCTAATTATCTATTTGAAGAATGA 1032 0.438 METRAANRRANQDQDQDQNEPLKKQRVVLGELPNLTNLIDPQPKRTNKAAVTKKTLSSAKKAVDNEVEAESNISSPFVSDIYDYLRTMEVEKKRRPMVDYIEKVQRDVTITMRGILVDWLVEVAEEYKLLSDTLHLSVSYIDRVLSIVPVSEPKLHLLGVSSMLVASKYEEISPPYVEEFCLITDNTYHKAEVVSMEADILKALNFELGNPTVKTFLRRYTGIACENKASSLQFEFMSYYLAELSLLDYYCLKFLPSLVAASVVFLARFIIWPDLQTWTSALYECSRYKSAYLKECVLVLHDLYMARKGGSFQAIREKYRQHKFKYVANLPAPPHLPNYLFEE 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3736 343 Pfam Cyclin, C-terminal domain 211 332 IPR004367 -
Ssu1g3736 343 SUPERFAMILY Cyclin-like 75 208 IPR036915 -
Ssu1g3736 343 CDD CYCLIN 112 201 IPR013763 -
Ssu1g3736 343 SUPERFAMILY Cyclin-like 211 335 IPR036915 -
Ssu1g3736 343 ProSitePatterns Cyclins signature. 113 144 IPR006671 -
Ssu1g3736 343 MobiDBLite consensus disorder prediction 1 24 - -
Ssu1g3736 343 Gene3D - 80 329 - -
Ssu1g3736 343 PANTHER CYCLIN-A3-1-RELATED 18 342 - -
Ssu1g3736 343 CDD CYCLIN 211 301 IPR013763 -
Ssu1g3736 343 SMART cyclin_7 215 302 IPR013763 -
Ssu1g3736 343 SMART cyclin_7 118 202 IPR013763 -
Ssu1g3736 343 MobiDBLite consensus disorder prediction 1 27 - -
Ssu1g3736 343 SMART Cyclin_C_2 211 333 IPR004367 -
Ssu1g3736 343 PANTHER CYCLINS 18 342 IPR039361 -
Ssu1g3736 343 Pfam Cyclin, N-terminal domain 80 208 IPR006671 -
Ssu1g3736 343 PIRSF Cyclin_A_B_D_E 1 340 IPR039361 -
Ssu1g3736 343 Gene3D - 94 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3736 Ssu-Chr1 93751269 93754010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3736 3 343 Core Cell Cycle Gene Families AT5G43080 56.268 1.20e-132 380
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3736 1 93751269 93754010 Ssu1g3736 1 93751269 93754010 ECH
Ssu5g0296 5 6355342 6358187 Ssu1g3736 1 93751269 93754010 PCT