Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3725 atGGCGTCGAGTTTTGATCGATGGGAAAAAGATCCTTTCTTTAACGCCGCCGAAGAAGTTCAGGAATCTGCAGACAGGATGGAATCTACGTATAGAACATGGATTCATGCAATGAGAGATGCGTCCAGCCCATGGAACTGTGATGAAATCCGCCGAGATCTACATACTGCCCTTGGCACCGCTAAATGGCAGTTAGAGGAATTTGAACGGGCAGTTAGGACAAGTTATAGCAAAGTTTCAAGTGAGGATGCGAGAAATAGGCACCGGGATTTTATTGATGCCATTGGTAACAAGATTACCGAAGTTGAACATTTGTTACAAGAATCTGCTCATTCAGGTAGCAAGGCGTCTCTGCCTTGGACGCGTCTCGATGAAGGAGAACAAGACGAGCTTGCATCGTTTCTTTCGGGAATGCCGGCTGCTGGTGGCAAAAACCCTATTAAATGTATCAGCAGAGATGATGAAAATTTGCAATTAAGTGATAAAGATTCGTTCAGTAATTGTTCAAGCAATTTACATGTTTCATCTGGGTGGGGTTTGTCGGAAGCAGCGCAGGAGAAATCACATGGGCATCGCAGGGCTGCTAGTGCTGATGCTGATATTGGTTCTTGGAAAATCACCGTTTCTGACAATGTGCAACAATCGAGTTCCTCCAATGGTTCTTCTGGTCCTATACATAAGGTAGCCAGTCTCTCTGGATTTTTTGGTTCCATGGAAACCATCTCTAAGTTGAAGTGGCCTAAAAATGGTTATAGAAAGCTGAAAGCGGTAAATCATTGTGAAGAAATGGATAACACGCTACTACCATCAGCTGGATTGAATGGGGGCGTCAATGCATACTATGAAAGAAGTAAGAGCTGCCTTGATAATTGTGATGAATGTTATGATAAGCAACTCCATGGGTGGTACGGGGTTTTGCAAAGGCAGCTTCAAAGATCTCAATACCAAATGCAATACAATCGGCATGTTCAAATAACTGTCTGGGCTGTTATTCTCCTTTGCTTGATTGGTAGGCTCTGgatctttgtgtgtgtgtgtgcaaaaatatatacacttgCATGCTCTCAAATTTCTTAG 1077 0.4197 MASSFDRWEKDPFFNAAEEVQESADRMESTYRTWIHAMRDASSPWNCDEIRRDLHTALGTAKWQLEEFERAVRTSYSKVSSEDARNRHRDFIDAIGNKITEVEHLLQESAHSGSKASLPWTRLDEGEQDELASFLSGMPAAGGKNPIKCISRDDENLQLSDKDSFSNCSSNLHVSSGWGLSEAAQEKSHGHRRAASADADIGSWKITVSDNVQQSSSSNGSSGPIHKVASLSGFFGSMETISKLKWPKNGYRKLKAVNHCEEMDNTLLPSAGLNGGVNAYYERSKSCLDNCDECYDKQLHGWYGVLQRQLQRSQYQMQYNRHVQITVWAVILLCLIGRLWIFVCVCAKIYTLACSQIS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3725 358 Pfam Syntaxin 6, N-terminal 11 103 IPR015260 GO:0016020|GO:0048193
Ssu1g3725 358 SUPERFAMILY t-snare proteins 10 108 IPR010989 GO:0016020|GO:0016192
Ssu1g3725 358 Gene3D - 9 110 - -
Ssu1g3725 358 PANTHER OS05G0443700 PROTEIN 1 342 - -
Ssu1g3725 358 PANTHER EXPRESSED PROTEIN 1 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3725 Ssu-Chr1 93613109 93614689 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3725 1 93613109 93614689 Ssu1g3725 1 93613109 93614689 ECH
Ssu5g0306 5 6490986 6491886 Ssu1g3725 1 93613109 93614689 PCT