Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3718 ATGGCTCTGGAAGCTCTTCAATCACCCACCGCAGCCGCTCCCTCGTTCGGTCCCTTCGAGGAAGCCAGTCTCCGTTACTTAGAGGCACCATGGGCGAAACGAAAGCGTTCTAAGCGTAGCCGCATGGACCAACACCACCCTTCATGCACCGAGGAAGAGTACCTCGCTCTTTGCCTCATCATGCTAGCTCGCGGCGGCGCCACCGCCAAGCCTGTTCTCTCCGACAACGACTCGGCGCCGCTCCCCGTCGCGAAACTCAGCTACAAATGCTCCGTGTGCAACAGAGCCTTCTCCTCTTACCAAGCGCTCGGCGGACACAAGGCCAGCCACCGGAAATTGGCCGGCGCCGCCGCTGCCGAAGACCACTCGACCGCCTCCGCCGCGACGACGAGCTCGGCGTCCAACGGCGGAGGCAGGACCCACGAGTGCTCCATATGCCACAAGACGTTCCCGACAGGACAGGCCTTGGGAGGACACAAACGTTGCCACTACGAAGGCGGTGGTAACAGCGCCGTAACCTGCCTCGGAAGGTGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTCGATCTCAACCTCCCGGCTTTTCCGGACTTTTCTACAAGGTTCTTCGCGGATGA 621 0.6135 MALEALQSPTAAAPSFGPFEEASLRYLEAPWAKRKRSKRSRMDQHHPSCTEEEYLALCLIMLARGGATAKPVLSDNDSAPLPVAKLSYKCSVCNRAFSSYQALGGHKASHRKLAGAAAAEDHSTASAATTSSASNGGGRTHECSICHKTFPTGQALGGHKRCHYEGGGNSAVTCLGRCGVHSHRKPPRFRSQPPGFSGLFYKVLRG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3718 206 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Ssu1g3718 206 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Ssu1g3718 206 Gene3D Classic Zinc Finger 85 163 - -
Ssu1g3718 206 SUPERFAMILY beta-beta-alpha zinc fingers 88 163 IPR036236 -
Ssu1g3718 206 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 163 IPR013087 -
Ssu1g3718 206 Pfam C2H2-type zinc finger 88 112 - -
Ssu1g3718 206 Pfam C2H2-type zinc finger 141 164 - -
Ssu1g3718 206 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 182 IPR044653 GO:0003700
Ssu1g3718 206 SMART c2h2final6 88 110 IPR013087 -
Ssu1g3718 206 SMART c2h2final6 141 163 IPR013087 -
Ssu1g3718 206 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Ssu1g3718 206 MobiDBLite consensus disorder prediction 123 138 - -
Ssu1g3718 206 PANTHER ZINC FINGER PROTEIN ZAT10 1 182 - -
Ssu1g3718 206 MobiDBLite consensus disorder prediction 114 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3718 Ssu-Chr1 93486159 93486779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3718 1 169 C2H2 Transcription Factor Family AT1G27730 57.471 1.91e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu1g3718 zf-C2H2_6 1.8e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3718 1 93486159 93486779 Ssu1g3718 1 93486159 93486779 ECH
Ssu5g0315 5 6653467 6654189 Ssu1g3718 1 93486159 93486779 PCT