Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3713 ATGGACCCCAGAATCTGGAGCAAACTGCCTCCTGATGTCGTGGAGCACATACTTTTGTTGCTCCCTCTCAAAACACTCTTGAATCTGAGACCCACTTGCAAGGCCTTCACTTCACTCCCCTTCTCTCCCTCCTTCATCTCCAAACACTCCTCTTCTTCCTCacccttctcttcctttctctcacTCTCCCACCCTCAGTGTCCCCACCACTTCCCTCTCTACGATTCCAACCTTCGCTCTTGGCGAAGcatctctctctccctctctcgttcttttcccttttcttcaTCCTTCACTCTCGTGTCCTCCTCCGGTGGCCTCTTTTGTCTCTGTGACccctcctcttcttccttcctCGTGTGCAACTTCTTTGTCAAGTCCTACAGAAGGATCGAGTCCCCAGCTCGCTCTCTTCACTTGGGTCATCTCACTTTTGTTACTACCCCTCTTGGGTACAAAATAGTGCTTCTTTGTTCCGACACTGCCTTTGTTTACGATTCTAATGAACTTTCGTGGCGAAGAAATGAGGGTTTCAGTGGCATCCTCAGTTACCACCAGCAGGGCGCTTTCCTTGACGGGGGCTTGTATTTTACCACGCCGGAACCGTTTTCGGTGGCGCGTTTTGATTTGGAGAGTGGGAAATGGGAGAGGCACGTTGCTGAGTTGCCACACCAAGTCACTTTCGTGAGGCTGGTGAGTGATGGAGAGGGGAAGTTGTGTTTGCTCGGTGGGGTTGGGGAGGATGGGATCTCGAGGAGCATCAAGTTGTGGGAAATGATGGGTGAAGGGGTTTGGGTGGAAGTGGCGACCTTGCCCGAGGTTATGTGTAGGAAATTTGTGTCGGTTTGCTACCATAACTACGACCATGTTTATTGCTTCTGGCATCAGGGAATGGTCTGCGTTTGCTGCTATATGTGGCCAGAGATATTGTATTACAGTGTTTTGAGGAGGGGCTGGGATTGGCTTCCCAGGTGCCCCTATTTGCCTCTCAAATTTAGCTGTGGTTTCAAGTGGTTTTCTTTTGTTCCAAAGCTCTATGCTTCGGCGTTGGTCAGACTTGTGCCTCCTGTACAAGAGGAAGGCGCTCATTGCACCAGCATTACATGA 1107 0.4688 MDPRIWSKLPPDVVEHILLLLPLKTLLNLRPTCKAFTSLPFSPSFISKHSSSSSPFSSFLSLSHPQCPHHFPLYDSNLRSWRSISLSLSRSFPFSSSFTLVSSSGGLFCLCDPSSSSFLVCNFFVKSYRRIESPARSLHLGHLTFVTTPLGYKIVLLCSDTAFVYDSNELSWRRNEGFSGILSYHQQGAFLDGGLYFTTPEPFSVARFDLESGKWERHVAELPHQVTFVRLVSDGEGKLCLLGGVGEDGISRSIKLWEMMGEGVWVEVATLPEVMCRKFVSVCYHNYDHVYCFWHQGMVCVCCYMWPEILYYSVLRRGWDWLPRCPYLPLKFSCGFKWFSFVPKLYASALVRLVPPVQEEGAHCTSIT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3713 368 SUPERFAMILY F-box domain 3 296 IPR036047 GO:0005515
Ssu1g3713 368 TIGRFAM F_box_assoc_1: F-box protein interaction domain 106 314 IPR017451 -
Ssu1g3713 368 Pfam F-box domain 6 36 IPR001810 GO:0005515
Ssu1g3713 368 PANTHER F-BOX/KELCH-REPEAT PLANT PROTEIN 5 347 - -
Ssu1g3713 368 Gene3D - 132 336 IPR015915 GO:0005515
Ssu1g3713 368 PANTHER F-BOX/KELCH-REPEAT PROTEIN 5 347 - -
Ssu1g3713 368 Gene3D - 4 48 - -
Ssu1g3713 368 SMART fbox_2 9 49 IPR001810 GO:0005515
Ssu1g3713 368 SUPERFAMILY Kelch motif 69 334 IPR015915 GO:0005515
Ssu1g3713 368 ProSiteProfiles F-box domain profile. 3 49 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3713 Ssu-Chr1 93438828 93442178 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0319 5 6722333 6723478 Ssu1g3713 1 93438828 93442178 PCT