Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3705 ATGATGACTAGTAGTGTGTCTTCGTCATCAACTGCTCGCTCTGATTTGATGTCGGTGTCTGGGGCCGAAGATGTGCAGTTTGTTCAAGATTCCTTGCTTGACCAAGCCCTCGATGCATTAGATGAGAAGAGGGGTTCCACGAGGGAGAAAGCTTTGTCATCGATCATTGACGCTTTCAATAGCAATATACAGCATCAGTTTGTGGAGAAGAAATTTGCTACCTTATTACATCTCTGTCTTGCTTCAATCAAAAAGGGATCCAAAAAGGCATCTGCTAAGGAGATTGCATTGGCATCTCATGCCATTGGTTGTTTGGCCTTGACTGTCGGATGTGGTGAGAATGCTCGTGAGATATTTGATGAATCTATTCGTCCTTTGGACGAATCTCTCACATCTAGGATAGATGTTTCAAAGACACCATCATTGCTGGAGTGTTTGGCTATTGTCACTTTTGTTGGAGGTATTGATCAAGAAGAAACAGAACGATCAATGGACATAATGTGGCGAGTGATTAATCCGAAATTAGGTTCCAATGTAGTTGCTGTCAAACCATCTGCTCCATTAATAGCCGCTGTGGTGTCTGCGTGGTCTTTTCTCCTTTCTACTGTGAGCAATTTGAAgctaaattcaaaaaattggcAAAATTCTATATCTTATTTATCTAGTCTTCTAGACAAGGAAGATAGGTCTGTACGAATTGCTGCTGGTGAAGCACTGGCTCTAATTTTTGAGATTGGAGTTATAGATAAATTTTCTGCTGGGTCAGACAGTGCAAGTGATACAACACAAGAAGAGAATAAACCACTTGAAAGCTACATATTTTTACAAGGACTGAAAGGAAAGGTGataaatcaatgtaaaaatctttctATCGAGGCTGGTGGAAAAGGTTCTGCTAAGAAAGATCTTAATAGTCAGAGGAACTTGTTCCGAGATATCTTGGATTTTTTTGAGTATGGTCACTCCCCGGAAATTTCAATGAAGATTGGTGGGGATTCCTTGCAGACATCATCATGGTCGGAAATGATACAGTTGAATTTTATCAAGCATTTTCTTGGAGGAGGATTCATTAAGCATATGCAGGAAAATGAGTTCCTACATGATGTCTTTGGTTTCTCACCGAAGAGAAAGTATCTTAATAACAACGAGAACAGAATGTCTGGTGGTGAAAAGAGAATGTTTAAGTCTCCAAATTCGGTTTTGAACAAGGCTAGGACACAATTACTTAATAAGCAGCGGTTATTATCTGAGGTTGGCGTTCTTACCATATAA 1272 0.3892 MMTSSVSSSSTARSDLMSVSGAEDVQFVQDSLLDQALDALDEKRGSTREKALSSIIDAFNSNIQHQFVEKKFATLLHLCLASIKKGSKKASAKEIALASHAIGCLALTVGCGENAREIFDESIRPLDESLTSRIDVSKTPSLLECLAIVTFVGGIDQEETERSMDIMWRVINPKLGSNVVAVKPSAPLIAAVVSAWSFLLSTVSNLKLNSKNWQNSISYLSSLLDKEDRSVRIAAGEALALIFEIGVIDKFSAGSDSASDTTQEENKPLESYIFLQGLKGKVINQCKNLSIEAGGKGSAKKDLNSQRNLFRDILDFFEYGHSPEISMKIGGDSLQTSSWSEMIQLNFIKHFLGGGFIKHMQENEFLHDVFGFSPKRKYLNNNENRMSGGEKRMFKSPNSVLNKARTQLLNKQRLLSEVGVLTI 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3705 423 Pfam Interferon-related developmental regulator (IFRD) 6 318 IPR007701 -
Ssu1g3705 423 PANTHER INTERFERON-RELATED DEVELOPMENTAL REGULATOR 3 418 IPR039777 -
Ssu1g3705 423 Pfam Interferon-related protein conserved region 363 413 IPR006921 -
Ssu1g3705 423 SUPERFAMILY ARM repeat 25 244 IPR016024 -
Ssu1g3705 423 PANTHER INTERFERON-RELATED DEVELOPMENTAL REGULATOR 2-LIKE ISOFORM X1 3 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3705 Ssu-Chr1 93294724 93298854 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0325 5 6914608 6921664 Ssu1g3705 1 93294724 93298854 PCT