Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3700 ATGTTGTGCACTTGTTCCGGGGAGCAATTCAAATTCGAAGAGCCGCCACAGTCGCCGGAGTCCCTCGCGACCAGGGATTTCTCCGCCAGCGGACTTTCTTCGAGGACCGGGGAATGGGAAACTAAATTCGATGAAACTCAAGTAGAAGAAGCTGAATCTACTCTAAAAGAAGCTCTTTCCTTAAACTACGAGGAGGCTAGGGCTTTGTTGGGGAGGCTTGAATACCAAAGAGGGAATTTCGATGCTGCACTTCAAGTGTTTCAGGGTATAGACATCAACGGTTTGACCCCAAGAATGATCATGGCTATTGCTGAAAGAACCAAGCTAAGGAAACCACGTTCGAAGGCGGATGTGGTGGTTCTGAATGTGATGTCATTGCATTCGGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAAAATCATTAGAGGAACTTGGGCAATGCATTGAGGCTGCAAAGGAGTGTGGAACAATTCTGGATACGGTTGAATCTGCCCTTCCTAGTGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCAAGAGATGTTTCATAAAGCATTGGAGTTGCTTCCGAGCCTATGGATCAAAGCAGGGTTTCTAGATGAAGCTGTTACTGCATATCGTCGTGCTCTGGTCAAGCCATGGAATTTGGAGCCACGAAGGTTGGCTGCTGTACAAAAAGATTTAGCTACGATACTACTGTATGGCGGTGTTGAAGTTAGCGTACCCTCTCAGGTGCAGGTGTGGGGTCAGACAACACCCAAGAGTAGTGTTGAAGAAGCAATACTTTTGCTATTAATGCTCATGAGCAAGGTGGCAATTCGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACGTTTGCACTTTCAGTTACTGGGATGTTTGAGTTGTTGGCAGATCATGTAGAGCAGATCCTTCCAGGTATCTATAGTCGAGTCGAGAGGTGGTACTTTCTTGCTCTGTGTTATAGTGCAGCAGGACATAATGAGGTGGCATTGAACCTTTTGAGGAATGCTTGTGGCAGTTCTGAGGCAAGGCATAGACctcattttccttcatttttgttTGGAGCAAAACTTTGTTCCCAAGATCCTCGCCATGCTCATGAAGGCATTAACTTTTCACGTGAAGTTATTAATCTAGCTAAGCACCAAAATGAGCATTTTTTGGGTCAAGGCCACAAATTTCTTGGCATCTGCTATGGGGCTGCAGCTAGAATTTCTGTCTTGGATTCTGAAAGAAGTATATTTCAAAGAGAGTCTTTGGACTCTCTAAACTGTGCTGCTTTATATGGAAATGATGACTTGGAAGTGATATTCAGCCTTGGACTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTACAACAATACAATGATGTACTCAGACATGACTGTTGGCAGTTCAAGATGGTGGCAGCTGTTAGCACTCATAGTATCTGCACAGCAGCGGTTTGAGGATGCTGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGGGGGGATGGATCAACTTGAACCTCTAAGATTGAAAGCAGTACTTCAAATTGCTCAGCAGCAACCCAAGCAAGCAATAGAAACATATAGGATCTTGCTAGCACTAATTCAAGCAAAAAAGGAGCTTTGGCTTCAAGATAACAACGTTGATCAAGAACAAGCATTCAGGCATGAGGCATTAACAGAAAGGTATTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATACAGATGTTGGTTCTTTGCTCGATGCAAAAGCTTGTGTTGACAAAGCCCAGTTGAtagaatttttttctccaaGAAGTTGGCATATTACAGGGATGTTGCTTGAAGCTCAATCATTATACAAAGAGgcatttgtttccttttcagTATCATTGTCAATAGAACCAGATTACATTCCCAGTATCATTTCAACTGCAGAATTGTTGATGAACCTTGGTATGCAATCACTTCCGATTGCAAGAAGCTTTTTAATGAATGCTTTGCGATTAGAACCTACAAACCATGACGCTTGGTTCAACCTTGGATTGGTTTCCAAAATGGAAGGTTCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAACTTAAGCTTTCTGCTCCAGtgcaaaaatttaagtaa 2145 0.4186 MLCTCSGEQFKFEEPPQSPESLATRDFSASGLSSRTGEWETKFDETQVEEAESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDINGLTPRMIMAIAERTKLRKPRSKADVVVLNVMSLHSVSLLLEAILLKAKSLEELGQCIEAAKECGTILDTVESALPSGMPEGIGEDCKLQEMFHKALELLPSLWIKAGFLDEAVTAYRRALVKPWNLEPRRLAAVQKDLATILLYGGVEVSVPSQVQVWGQTTPKSSVEEAILLLLMLMSKVAIREIDWDAEIMDHLTFALSVTGMFELLADHVEQILPGIYSRVERWYFLALCYSAAGHNEVALNLLRNACGSSEARHRPHFPSFLFGAKLCSQDPRHAHEGINFSREVINLAKHQNEHFLGQGHKFLGICYGAAARISVLDSERSIFQRESLDSLNCAALYGNDDLEVIFSLGLENAIQRNLDAAYNNTMMYSDMTVGSSRWWQLLALIVSAQQRFEDAETIVDFALDEAGGMDQLEPLRLKAVLQIAQQQPKQAIETYRILLALIQAKKELWLQDNNVDQEQAFRHEALTERYLEMEAWQDLATIYTDVGSLLDAKACVDKAQLIEFFSPRSWHITGMLLEAQSLYKEAFVSFSVSLSIEPDYIPSIISTAELLMNLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAAEFFQAAYELKLSAPVQKFK 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3700 714 Gene3D Tetratricopeptide repeat domain 656 710 IPR011990 GO:0005515
Ssu1g3700 714 Coils Coil 56 76 - -
Ssu1g3700 714 Gene3D Tetratricopeptide repeat domain 34 241 IPR011990 GO:0005515
Ssu1g3700 714 Gene3D Tetratricopeptide repeat domain 257 539 IPR011990 GO:0005515
Ssu1g3700 714 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Ssu1g3700 714 SUPERFAMILY TPR-like 424 598 IPR011990 GO:0005515
Ssu1g3700 714 Gene3D Tetratricopeptide repeat domain 548 655 IPR011990 GO:0005515
Ssu1g3700 714 ProSiteProfiles TPR repeat profile. 675 708 IPR019734 GO:0005515
Ssu1g3700 714 SUPERFAMILY TPR-like 47 343 IPR011990 GO:0005515
Ssu1g3700 714 MobiDBLite consensus disorder prediction 13 38 - -
Ssu1g3700 714 PANTHER PROTEIN NPGR1 1 714 - -
Ssu1g3700 714 SMART tpr_5 605 638 IPR019734 GO:0005515
Ssu1g3700 714 SMART tpr_5 510 543 IPR019734 GO:0005515
Ssu1g3700 714 SMART tpr_5 474 507 IPR019734 GO:0005515
Ssu1g3700 714 SMART tpr_5 64 96 IPR019734 GO:0005515
Ssu1g3700 714 SMART tpr_5 675 708 IPR019734 GO:0005515
Ssu1g3700 714 Pfam Tetratricopeptide repeat 46 89 - -
Ssu1g3700 714 MobiDBLite consensus disorder prediction 21 37 - -
Ssu1g3700 714 SUPERFAMILY TPR-like 562 705 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3700 Ssu-Chr1 93241561 93244967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3700 1 713 Calmodulin-binding Proteins AT1G27460 59.331 0.0 854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3700 1 93241561 93244967 Ssu1g3700 1 93241561 93244967 ECH
Ssu5g0327 5 6938777 6939973 Ssu1g3700 1 93241561 93244967 PCT