Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3697 ATGGCATTTGCAGGAACAACCCAGAAGTGCATGGCTTGTGACAAAACAGTTTATCTTGTTGATAAGTTGACAGCGGACAACCGGGTGTACCATAAGGCTTGCTTCAGATGCCACCACTGCAAAGGAACACTCAAGcttagcaattataactCTTTTGAGGGAGTTCTTTACTGCAAGCCACACTTTGACCAACTGTTCAAAAGAACGGGTAGCCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAAACTGGCGATAATGAGAAACCTGCAGCAACTAAAGTCTCAAGTATGTTTGGTGGAACCAGAGATAAATGTGCTGGTTGTCAGAAAACAGTGTATCCCACTGAAAAGGTTACTGTGAATGGAACTTCTTATCACAAGAGTTGTTTCAAATGCACTCATGGAGGTTGTGTTATTAGTCCCTCCAATTACATTGCACACGATGGTAAACTCTACTGCAAACACCACCACATCCAACTGATCAAGGAGAAGGGCAATTTAAGCCAGCTTGAAGGTGACCATGAGAAGAGTGCAATGGAAGAGAAAATCAACGGTGAAGTAGTTGCGGCTGAGACATGA 594 0.4226 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKIAKPEKTGDNEKPAATKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTSYHKSCFKCTHGGCVISPSNYIAHDGKLYCKHHHIQLIKEKGNLSQLEGDHEKSAMEEKINGEVVAAET 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3697 197 PANTHER OS06G0237300 PROTEIN 1 185 IPR045268 GO:0051015
Ssu1g3697 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Ssu1g3697 197 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Ssu1g3697 197 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Ssu1g3697 197 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Ssu1g3697 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Ssu1g3697 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Ssu1g3697 197 Gene3D Cysteine Rich Protein 4 74 - -
Ssu1g3697 197 Gene3D Cysteine Rich Protein 105 174 - -
Ssu1g3697 197 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 185 - -
Ssu1g3697 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Ssu1g3697 197 MobiDBLite consensus disorder prediction 79 93 - -
Ssu1g3697 197 Pfam LIM domain 110 164 IPR001781 -
Ssu1g3697 197 Pfam LIM domain 10 64 IPR001781 -
Ssu1g3697 197 MobiDBLite consensus disorder prediction 77 98 - -
Ssu1g3697 197 CDD LIM2_SF3 110 170 - -
Ssu1g3697 197 CDD LIM1_SF3 6 68 - -
Ssu1g3697 197 SMART lim_4 9 61 IPR001781 -
Ssu1g3697 197 SMART lim_4 109 161 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3697 Ssu-Chr1 93215268 93216999 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Ssu1g3697 LIM 2.7e-13 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3697 1 93215268 93216999 Ssu1g3697 1 93215268 93216999 ECH
Ssu5g0331 5 6979687 6980989 Ssu1g3697 1 93215268 93216999 PCT