Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3335 ATGGCGACGACGGAGTCCGATCTCGATTACGAGTTTCCAAATCTCGATTACGAGCTTCGGTATCTGAGTCTCGCTGGAATGGATGCGTTCTCCGGTTTCCAAAATCTATTACCGGATGCGATGACTACATTTTCAAATTGTGGAATAACAGACCCCGTTTTTGCCCAAAACCTCACTCCCAAGCATTCCACCATCACTGCTACCATTGATTCTCAGTCATCTATTTGTGGCACTGGTAATGTTGGCAGCCCAGTGTCAGCTAATAAACCAGACGGCAGAGAGAATCATACGAAAGGAGCCACAAGTGGTTCCTCTGAGCCGTCTGATGAGGATGATGAAGCAGGTCCTTGTGAACAGAGCACAAATCCAGTTGATACGAAGCGCCTTAGAAGGAAGGATTCTAACCGCGAGTCTGCCAGAAGGTCAAGAAGAAGGAAACAAGCGCATTTGGCTGACCTTGAGTTGCAGgttgaaaaaatgaaagtggAAAATGCAACCCTATACAAGCAGTTCACGGATGCTAGGCAACAATTTCGTGAGGCTGATACGAATAACCGGGTACTAAAATCAGATGTAGAAGCTTTGAGAGCTAAGGTGAAGTTAGCTGAGGATATGGTCACTCGGAGCTCTTTTACTACGTTAAACAATCAGCTTCTTCAGACACAATGTCAAATGAGCACACCCCCGCAACTCAACACTACTAGTCTGCGCCGCATGGCGCATGTTTCGCCAACCATCACCGTCCATGGAAATGATGCCTCGTATAATGGTGTCACAGTTGGTGGACAGAATTCAGCTCTTGGAAACTTGGATATGACTTACAACGACATCAACAATGGAATCATGAGCGATGCTATGAGCTGTGGGACTATTTGGCCACTTGAATAG 888 0.4561 MATTESDLDYEFPNLDYELRYLSLAGMDAFSGFQNLLPDAMTTFSNCGITDPVFAQNLTPKHSTITATIDSQSSICGTGNVGSPVSANKPDGRENHTKGATSGSSEPSDEDDEAGPCEQSTNPVDTKRLRRKDSNRESARRSRRRKQAHLADLELQVEKMKVENATLYKQFTDARQQFREADTNNRVLKSDVEALRAKVKLAEDMVTRSSFTTLNNQLLQTQCQMSTPPQLNTTSLRRMAHVSPTITVHGNDASYNGVTVGGQNSALGNLDMTYNDINNGIMSDAMSCGTIWPLE 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3335 295 SUPERFAMILY Leucine zipper domain 127 178 IPR046347 GO:0003700|GO:0006355
Ssu1g3335 295 Coils Coil 136 170 - -
Ssu1g3335 295 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 125 188 IPR004827 GO:0003700|GO:0006355
Ssu1g3335 295 SMART brlzneu 123 187 IPR004827 GO:0003700|GO:0006355
Ssu1g3335 295 Gene3D - 126 183 - -
Ssu1g3335 295 PANTHER BZIP TRANSCRIPTION FACTOR 1 294 - -
Ssu1g3335 295 PANTHER BASIC LEUCINE ZIPPER 63 1 294 - -
Ssu1g3335 295 Pfam bZIP transcription factor 126 172 IPR004827 GO:0003700|GO:0006355
Ssu1g3335 295 MobiDBLite consensus disorder prediction 73 147 - -
Ssu1g3335 295 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 130 145 IPR004827 GO:0003700|GO:0006355
Ssu1g3335 295 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3335 Ssu-Chr1 86384072 86390087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3335 70 293 bZIP Transcription Factor Family AT5G24800 51.304 5.85e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu1g3335 bZIP_1 3.6e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3335 K25784 - gmx:780555 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3335 1 86384072 86390087 Ssu1g3335 1 86384072 86390087 ECH
Ssu1g3335 1 86384072 86390087 Ssu5g0692 5 16566216 16572937 PCT