Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3151 ATGGCCACCGCGAATCCGCAGCCTCTGCAGTTCGAGGACCCTGCGATTCCCgtcgacgacgacgacgacgacggcGGTGATGATGCTACGGATGAGTTGGAGGATGCGAATGTTAATTCAGTGAACGTCTCTAATGCTGCGAGTGCGAATCATGAAGCGGTGGTTGCTATGCCTTCGAGAACTAGCGAGCTCACTCTTTCTTTTGAGGGTGAGGTTTATGTCTTTCCCGCTGTCACTCCACAgaagGTGCAAGCTGTCTTGCTGCTTTTGGGAGGACGTGATGTGCCGGCAGGCATACCTTCAGTTGAACTACCATTTGATCAAAGTAACAGGGCCATGGGTGATACTCCAAAGCGTTCAAACCTTTCACGAAGAATAGCATCCTTGGTCAGGTTTCGCGAGAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGGTATTCCGTGAGAAAAGAGGTGGCACAGAGGATGCATCGGAAGAATGGGCAGTTTGCATCCTTGAAGGAAAGCCCAGGTTCATCTAATTGGGATTCTGCACGGAGTTCTAGTCAAGATGGCACTCCTCATTCTGAATCTGTACGTAGATGTCACCATTGTGGTGTCAGTGAAAATAACACTCCTGCAATGCGTCGTGGGCCAGCTGGACCAAGGACTTTATGTAATGCGTGTGGCCTTATGTGGGCTAACAAGGGCACACTCAGAGATCTCAGCAAGGGAGGAAGAAATCTCTCTGTTGAGCAAAGTGATCTGGACACTCCTATTGATGTCAAGCCTACTACTGTTCTTGGAGGGGAATTGCCTGGCATCCATGATGAGCTAGGTAGTTCTGAAGATCCTTCCAAGTCCAGCGCTGCTGATGGTTCTAGCAATCATGCTGTAAACCCCAGTGATGAGGAATTGCCTGAACCTGCAGAACACTTTACAAACACTCTGCCACTGGGAATTGATCATTCTTCAACAAATGACAATGAGCAGGAACCTTTGGTCGAGCTTTCTAATCCTTCAGATACAGATATTGACATTCCAGGAAACTTTGATTAG 1041 0.463 MATANPQPLQFEDPAIPVDDDDDDGGDDATDELEDANVNSVNVSNAASANHEAVVAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVPAGIPSVELPFDQSNRAMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESPGSSNWDSARSSSQDGTPHSESVRRCHHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDTPIDVKPTTVLGGELPGIHDELGSSEDPSKSSAADGSSNHAVNPSDEELPEPAEHFTNTLPLGIDHSSTNDNEQEPLVELSNPSDTDIDIPGNFD 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3151 346 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 346 - -
Ssu1g3151 346 SMART GATA_3 190 243 IPR000679 GO:0006355|GO:0043565
Ssu1g3151 346 MobiDBLite consensus disorder prediction 312 332 - -
Ssu1g3151 346 ProSiteProfiles CCT domain profile. 125 167 IPR010402 GO:0005515
Ssu1g3151 346 SMART tify_2 57 92 IPR010399 -
Ssu1g3151 346 MobiDBLite consensus disorder prediction 249 346 - -
Ssu1g3151 346 MobiDBLite consensus disorder prediction 158 195 - -
Ssu1g3151 346 ProSiteProfiles Tify domain profile. 57 92 IPR010399 -
Ssu1g3151 346 MobiDBLite consensus disorder prediction 1 37 - -
Ssu1g3151 346 Pfam tify domain 59 91 IPR010399 -
Ssu1g3151 346 Gene3D - 190 243 IPR013088 GO:0006355|GO:0008270
Ssu1g3151 346 MobiDBLite consensus disorder prediction 166 189 - -
Ssu1g3151 346 PANTHER GATA TRANSCRIPTION FACTOR 28 1 346 IPR045280 GO:0006355
Ssu1g3151 346 CDD ZnF_GATA 195 239 IPR000679 GO:0006355|GO:0043565
Ssu1g3151 346 Pfam GATA zinc finger 196 232 IPR000679 GO:0006355|GO:0043565
Ssu1g3151 346 ProSitePatterns GATA-type zinc finger domain. 196 223 IPR000679 GO:0006355|GO:0043565
Ssu1g3151 346 Pfam CCT motif 125 166 IPR010402 GO:0005515
Ssu1g3151 346 MobiDBLite consensus disorder prediction 15 34 - -
Ssu1g3151 346 ProSiteProfiles GATA-type zinc finger domain profile. 190 249 IPR000679 GO:0006355|GO:0043565
Ssu1g3151 346 MobiDBLite consensus disorder prediction 278 295 - -
Ssu1g3151 346 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 190 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3151 Ssu-Chr1 82461582 82467215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3151 5 238 Tify Gene Family AT1G51600 49.200 1.80e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu1g3151 CCT 1e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3151 - - gmx:100801328 613.994