Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3009 ATGCCAAATCCAAAGCACGTTCTGCAGAGCACTCTACTCCTCTCGTTCCTTTTTCAGGCCCTGTGTAAATCCACCATCGAGCCATGTTCGAACTCGGACTCATGCAACGCGCTGCTCGGGTACACTCTCTACACTGACCTCAAAGTCTCAGAGGTGGCGTCCCTCTTCCAAATCGACCCCATCGCGCTTCTCACCGCGAATGCCATCGACATCTCCTACCCCGACGTGGAGCACCACATCCTCCCCTCCAGACTCTTCCTCAAAATCCCCATCTCCTGCTCCTGCGTCGACGGCATTCGCAAATCGGTGTCCACGCACTACAAGACGCGCCCCTCCGACACCCTCTCCTCCATCGCCGACTCCGTCTACGGCGGCCTCGTTTCCTCCGACCAGCTCCGAGAGGCCAATTCCATCGCCGACCCTTCCGTTCTCGATGTGGGACAAAACCTCGTGGTTCCTCTCCCCTGCACCTGCTTCAATGGCTCCGATAACTCTCTCCCCGCGATTTACCTCTCCTACGTGGTTCGCCCCGTTGATACCCTCGCCGCCATTGCTGCCAGGTATTTCACCACTCTCACCGATTTGATGAATGTTAATGCCATGGGAAGCACCGCTATTAACGATGGTGATATCCTTGCTGTTCCAATACCGgCTTGTGCTTCGAATTTTCCGAAATCCGCCTCTGATTTTGGCTTACTTGTCCCGAATGGAAGCTATGCCATTACCGCGGGTCACTGTGTGCAGTGTAGCTGTGGACCTCGAAACCTTAATTTGTACTGTATGCCGGCTTCTCTGGCTGTTTCTTGCTCCAGCATGCAATGCAAAGGCAGCAACCTTATGCTTGGGAATGTTACAGTGCAGCAGACTAGTGGTGGTTGCAATGTTACTTCTTGCAGTTATGATGGCATTGTTAATGGCACCATTGTAACAACGTTGTCCCCATCTCTTCAGCCTCGATGTCCAGGGCCGCAGGAATTCCCTCCCCTTTTTGCCCCACCTACAACTGTTGCAAGGGACTCGTGGGATTTCGGGTTTCATCACACGCTTAGCCATTTATTATTTGGTGCTATGCTGAATTATCGTGTTTATCTAGTgaAAAGAACTTGGGCCTCCAAGCCCTGGAAGTATTATGGCATTGTGCTGGCAAGGAATGAGTTTGAAGTGAGAGCAGAAGCAGTCGTTCCGTCCCAACGGACACAGCACACACCATGCCTTCTGCTCCTTCGAAACTCTACGCAGGTACTCGCTTTCCTCAACTCGATCCTGCTCCTCGGCCAGCTCAACCAGGTCATCGTCATAGCCACCGGATGCAATTCCTGCGGCTACGTTTACGATTCCACTTCCGAACGGAACCATGGCTCCACGACCGGTACAATGCCCGCGCTTTATTCTAATTTACTTCACAATCTGGACGAGTTCGTCGCTAGGGACAAGCAATTAGCGACGGCTCACACGCCGGGAACCGTTCCTTCTTCGCTGTTATCGGGCTCCTTGTCCATGGCGCTTTGTTATATACAGAGAGCTTTTCGTTCAGGACCGATGCCTCCTCAGCCTCGGATTTTATGTTTGCAAGGAGCAGCTGATGGACCAGAACAGTATGTGGCAATCATGAATGCAATATTCTCTGCACAGCGTTCTACAGTTCCTATAGATTCTTGTTATATTGGTTCGAACAATTCTGCATTCCTCCAGCAGGCTTCATACATAACTGGTGGAATATATTACAAGCCTCCCCAATTGGATGGGCTTTATCAATATCTTTCAGTAAGCTTGTGTTTTAATTGGCTGTTTTGA 1794 0.51 MPNPKHVLQSTLLLSFLFQALCKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSRLFLKIPISCSCVDGIRKSVSTHYKTRPSDTLSSIADSVYGGLVSSDQLREANSIADPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDTLAAIAARYFTTLTDLMNVNAMGSTAINDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKGSNLMLGNVTVQQTSGGCNVTSCSYDGIVNGTIVTTLSPSLQPRCPGPQEFPPLFAPPTTVARDSWDFGFHHTLSHLLFGAMLNYRVYLVKRTWASKPWKYYGIVLARNEFEVRAEAVVPSQRTQHTPCLLLLRNSTQVLAFLNSILLLGQLNQVIVIATGCNSCGYVYDSTSERNHGSTTGTMPALYSNLLHNLDEFVARDKQLATAHTPGTVPSSLLSGSLSMALCYIQRAFRSGPMPPQPRILCLQGAADGPEQYVAIMNAIFSAQRSTVPIDSCYIGSNNSAFLQQASYITGGIYYKPPQLDGLYQYLSVSLCFNWLF 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3009 597 Gene3D LysM domain 160 226 IPR036779 -
Ssu1g3009 597 SUPERFAMILY LysM domain 171 216 IPR036779 -
Ssu1g3009 597 Pfam Transcription factor Tfb4 407 591 IPR004600 GO:0000439|GO:0006289|GO:0006355
Ssu1g3009 597 Gene3D LysM domain 99 159 IPR036779 -
Ssu1g3009 597 SMART LysM_2 106 153 IPR018392 -
Ssu1g3009 597 SMART LysM_2 172 215 IPR018392 -
Ssu1g3009 597 CDD LysM 105 152 IPR018392 -
Ssu1g3009 597 CDD LysM 172 214 IPR018392 -
Ssu1g3009 597 ProSiteProfiles LysM domain profile. 171 214 IPR018392 -
Ssu1g3009 597 Pfam LysM domain 107 153 IPR018392 -
Ssu1g3009 597 Pfam LysM domain 173 215 IPR018392 -
Ssu1g3009 597 Gene3D von Willebrand factor, type A domain 393 593 IPR036465 -
Ssu1g3009 597 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 3 345 - -
Ssu1g3009 597 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 3 345 - -
Ssu1g3009 597 ProSiteProfiles LysM domain profile. 105 152 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3009 Ssu-Chr1 78794561 78800677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3009 15 339 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 76.923 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3009 - - gmx:100777292 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3009 1 78794561 78800677 Ssu1g3009 1 78794561 78800677 ECH