Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2868 atgttccCACAAAGACAGTACAGTTTTAACATCAGCGGTGCCGGGCTTGAACAAATGTTGCATCAtcaacaacatcatcatcatcagctCCCGTCTCCTCACGTGGAGCGAAGGTGGAAACCCAGCGTCGAGGTGGCACCCAATTGCCCTCGTTGCGCTTCCACCAACACCAAATTCTGTTACTACAACAATTACAGCTTGTCGCAGCCGAGGTATTTCTGCAAAGGCTGCAGACGCTACTGGACCAAGGGTGGCTCTCTCCGGAACGTCCCCGTCGGCGGTGGCTGCCGCAAAAACCGCCGCGGAAAGTCATCGAGGCAGCACCAAAGCCAACGCCCTTCCGTGAATAACTGCCTTTCCGAAGAGGGGGAGTCATCGGCACATCATCAAAACAACAACGGGTCTCGTGACATAGACATGGCCCTCGTGTTTGCCAAATTCTTGAACCCAAAACCGAGAACCGGTGAGGAGTTTGAGAGCGAGGCTCACAATGGCTCATCGTCGACCTCCCACGATTACTTGACGCCGGAGAGCGTTGAAGCTGAGAATGATGCAGTGGTCCAGCCCCGGAATGAGCCTTTATCGGATCCAATTGTTGAGAATTTTGGAGAAGGGGAGGAATTGAGTTTGAGTGGGATTGATGAGTTGGAGAGGCTTCTGGGTGTGTGCGGTGATGAAGATAATGTTCTGTGGTCTGATGCTACCTTTTCCTCTTCGGTTACTTGGGAACCACCCGTGAAGCAAATGCAATTGCAGGACTTGGAATATTCGATGCTGAATGAGGATGGCGGTCAATTATTACCCATCACTTCTGCTACAGGGAGCGACACTTGCTGGAGTAATTGGAGCTCCTTTGATCTTTCAAACATGGAAGTGTTCTCCTCAAGTCCGTAA 894 0.4978 MFPQRQYSFNISGAGLEQMLHHQQHHHHQLPSPHVERRWKPSVEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKSSRQHQSQRPSVNNCLSEEGESSAHHQNNNGSRDIDMALVFAKFLNPKPRTGEEFESEAHNGSSSTSHDYLTPESVEAENDAVVQPRNEPLSDPIVENFGEGEELSLSGIDELERLLGVCGDEDNVLWSDATFSSSVTWEPPVKQMQLQDLEYSMLNEDGGQLLPITSATGSDTCWSNWSSFDLSNMEVFSSSP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2868 297 MobiDBLite consensus disorder prediction 108 135 - -
Ssu1g2868 297 MobiDBLite consensus disorder prediction 153 173 - -
Ssu1g2868 297 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Ssu1g2868 297 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Ssu1g2868 297 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 33 266 - -
Ssu1g2868 297 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 266 IPR045174 GO:0003700|GO:0006355
Ssu1g2868 297 MobiDBLite consensus disorder prediction 91 135 - -
Ssu1g2868 297 Pfam Dof domain, zinc finger 47 101 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2868 Ssu-Chr1 75842368 75843261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2868 39 152 C2C2-Dof Transcription Factor Family AT3G52440 61.017 2.43e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu1g2868 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2868 - - gmx:100806008 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2868 1 75842368 75843261 Ssu1g2868 1 75842368 75843261 ECH