Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2792 ATGGCCTTTTGGctgtctttttgtttttattgttttgaaatttggatattttttcAGGGTATTGGAGTGGTTAAACCTATGGAAGGTTCAAAGCCTCCTCCTATGTTGGAGAGAAGGGCAAGGCCTCAGAAGGATCAAGCTTTGAACTGCCCAAGGTGCAATTCCACCAACACCAAATTCTGCTACTACAATAACTATAGCCTCTCTCAGCCAAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAGGGTGGGTCACTGAGAAATGTTCCTGTGGGTGGTGGCTCTAGAAAGAACAAGAGATCAACTCCATCAGCACCATCATCATCAGCATCAGCACCAACAAAGAAGCTTCCTGATCTGACAACACCAAATTTCCCTCAATCTGCTTCTCAGGACCCTAAGATCCACCAAGGCCAAGATCTTAACTTAGCATATCCACCAGCTGAGGACTATAGCACTGTATCTAAGTTCATTGAGGTTCCTTACAGCACTGAATTAGACAAGGGTGGTCTTCAAAACCCCACttcctcatcaacatcatcttcTCAGTTGTCTGCCATGGAGCTTCTCAAAACTGGGATTGCTTCCTCCAGGGGTTTGAACTCCTTCATGCCAATGTATAATTCAACTGGGTTTCCTTTGCAAGACTTCAAGCCACCTGGCCTTAACTTCAGTCTCGAGGGGTTTGAAAATGGTTATGGGGGTCTTCAGGGAATTCAAGAGGGTCCTACAGGTGCAAGGATCTTGTTTCCTGTGGAGGACTTGAAGCAGCAGGTTCCAACCACGAATGAGTTTGATCAGCAGAATAGAGGTCAAGGAGATTCAACTGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG 873 0.4307 MAFWLSFCFYCFEIWIFFQGIGVVKPMEGSKPPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPSAPSSSASAPTKKLPDLTTPNFPQSASQDPKIHQGQDLNLAYPPAEDYSTVSKFIEVPYSTELDKGGLQNPTSSSTSSSQLSAMELLKTGIASSRGLNSFMPMYNSTGFPLQDFKPPGLNFSLEGFENGYGGLQGIQEGPTGARILFPVEDLKQQVPTTNEFDQQNRGQGDSTGYWNGMLGGGSW 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2792 290 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 26 287 - -
Ssu1g2792 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 287 IPR045174 GO:0003700|GO:0006355
Ssu1g2792 290 MobiDBLite consensus disorder prediction 97 137 - -
Ssu1g2792 290 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Ssu1g2792 290 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Ssu1g2792 290 Pfam Dof domain, zinc finger 45 102 IPR003851 GO:0003677|GO:0006355
Ssu1g2792 290 MobiDBLite consensus disorder prediction 265 290 - -
Ssu1g2792 290 MobiDBLite consensus disorder prediction 89 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2792 Ssu-Chr1 74345801 74346673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2792 35 290 C2C2-Dof Transcription Factor Family AT3G61850 45.745 9.03e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu1g2792 zf-Dof 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2792 - - gmx:778114 469.929