LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g2444	ATGGAGGGAAGATCACATTCGTCCGAAAGAGAAGAGGAATATGATTTGTTCCCAATATATTCCGAAAGGTCCCAACAAGACATGTCGGCCATGGTCTCTGCCCTCACACAAGTCATTGGTGGCTCCATCAATGACCCTCTTCAGCTGCATGGAGACCTTTCAACTTCTTCCCACAACACCTCAACCCAGAATAACGAACAAGCCCAACTACCACAACAAGATCAAGGGAATGTAAGAAGAAGACACTATAGAGGAGTAAGGCAGCGTCCATGGGGAAAGTGGGCTGCAGAGATTCGCGATCCGATGAAGGCAGCGAGGGTATGGCTTGGAACTTTTGAAACTGCTGAGGCTGCAGCTCTTGCCTATGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAAGCAAAACTCAATTTTCCCGAAAGGGTTCAAGGCACAGGTGAATTTGGTTACCTCACAAATCAACACGTGTCACCAAGCAGTAGTACTGAGCAAGCTTCTAACCAAGTTGCTCCACACTTTGCTCAAGAAACATATTCATCAAGTCCCTTTCAATATGGACAACAATTTATGGGTAGTGGGAGCAGCAACTTCAATCAAGATATGCTTCGTTTCTATGGGGGAGACATGTTGGTTTCTTCTCAGCCAGCTGCATCTTCGTCTTCTTCTACTGGACTATCTCAGCAGCAGCAAGAAGAGTTTCTGAGATTTTCGATGCAATTTGGAGGCTCTTCTACTTCTGAGGATCCTAGGAATTCGAGGGATGATAGACACTGA	774	0.4587	MEGRSHSSEREEEYDLFPIYSERSQQDMSAMVSALTQVIGGSINDPLQLHGDLSTSSHNTSTQNNEQAQLPQQDQGNVRRRHYRGVRQRPWGKWAAEIRDPMKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTGEFGYLTNQHVSPSSSTEQASNQVAPHFAQETYSSSPFQYGQQFMGSGSSNFNQDMLRFYGGDMLVSSQPAASSSSSTGLSQQQQEEFLRFSMQFGGSSTSEDPRNSRDDRH	257

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g2444	257	MobiDBLite	consensus disorder prediction	212	257	-	-
	Ssu1g2444	257	MobiDBLite	consensus disorder prediction	212	247	-	-
	Ssu1g2444	257	CDD	AP2	82	140	IPR001471	GO:0003700\|GO:0006355
	Ssu1g2444	257	SUPERFAMILY	DNA-binding domain	82	140	IPR016177	GO:0003677
	Ssu1g2444	257	PRINTS	Ethylene responsive element binding protein signature	83	94	IPR001471	GO:0003700\|GO:0006355
	Ssu1g2444	257	PRINTS	Ethylene responsive element binding protein signature	105	121	IPR001471	GO:0003700\|GO:0006355
	Ssu1g2444	257	Pfam	AP2 domain	82	131	IPR001471	GO:0003700\|GO:0006355
	Ssu1g2444	257	Gene3D	AP2/ERF domain	81	141	IPR036955	GO:0003700\|GO:0006355
	Ssu1g2444	257	MobiDBLite	consensus disorder prediction	46	76	-	-
	Ssu1g2444	257	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	19	242	-	-
	Ssu1g2444	257	SMART	rav1_2	82	145	IPR001471	GO:0003700\|GO:0006355
	Ssu1g2444	257	MobiDBLite	consensus disorder prediction	46	84	-	-
	Ssu1g2444	257	PANTHER	DNA-BINDING DOMAIN	19	242	IPR044808	GO:0003700\|GO:0009873
	Ssu1g2444	257	ProSiteProfiles	AP2/ERF domain profile.	82	139	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g2444	Ssu-Chr1	68043719	68045809	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g2444	15	154	AP2-EREBP Transcription Factor Family	AT5G61890	66.438	1.86e-58	184

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Ssu1g2444		AP2	5.7e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu1g2444	1	68043719	68045809	Ssu5g2957	5	76334643	76341366	ECH
	Ssu4g1841	4	33588940	33598925	Ssu1g2444	1	68043719	68045809	ECH
	Ssu3g0244	3	4364514	4368053	Ssu1g2444	1	68043719	68045809	ECH
	Ssu1g2444	1	68043719	68045809	Ssu1g2444	1	68043719	68045809	ECH
	Ssu5g2957	5	76334643	76341366	Ssu1g2444	1	68043719	68045809	PCT