Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2232 ATGTGTCTTGCACCCTACAACCTTTTTGTTTTGCATTGTGAGTTGGACCGGATTGGAGTATGTTTGGTTCAAAGggaagggggaaaaaaagaagagaaagccaaggaaaagaaaattaggaagagaacaaaaagaatgaaaagaaaaaggcattTAAAATCCAACAAGACAAATTTTACAGGCACAATTCACGAGGAGTCTGGAATGGATTCTTCTTCTTCACCCTCTGGGGACATGCTTACATGCTCAAGGCCCATGATAGAGAGGAGGCTAAGACCCCCACATGACCAAGCTCTAAAGTGTCCCAGGTGTGACTCAACCCACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACCTGCAGACGGTACTGGACCAAAGGAGGCACTCTTAGGAACATTCCTGTTGGTGGAGGCTgcagaaagaacaaaaaagtcTCTGCCAAAAAATCCAATGACCACCAATTAGTTAACAGCCAAATTAGCCAAACACAGCCCCCACCCTCCTCCTACCATCACAACCCCAAAGACCTTCAACTCTCTTTCCCAGATGTGCAATTTTCCCACCTCAGCAACTTGCTTGGGACCAATGCAGGAGCACTGGGAAACCCTAGTTTCATGGAGAACAAGTATGGCATTGGCATGATCGAGAACCCTAGGCCAATTGACTTCATGATGGAGAGCAAGTTGGAGGGCATAATTGGGAGTAGTAGTTCTaggaattttgatttttttggaaATAGTGATATGGGTATGGGTGTTGGGCTGGGAGATATGAACGGTACTCAAAATGGGTTGCCACCAAATTTTCATGGTCTTTGCTCCCCCGCATTTGGTGGCATGTCCCTTGATGGCAACAACAGTAGTAATGGGGCTAACTACTTAATGGACTCTTGCCAGCGTTTGATGCTGCCATATGATGCCAATGAGGACCATAATGCCTCAATTGATGTGAAGCCAAACCCTAAGCAACTATTGTCCCTTGAATGGCAAGACCAGGGTTGCTCTGATGCGGGAAAAGACTCATTTGGTTATCTTAACGGTCCAGGATCATGGACTGGCATGATGAACGGCTATGGATCTTCCACTACAAACCCTTTGGTCTAA 1131 0.4191 MCLAPYNLFVLHCELDRIGVCLVQREGGKKEEKAKEKKIRKRTKRMKRKRHLKSNKTNFTGTIHEESGMDSSSSPSGDMLTCSRPMIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDHQLVNSQISQTQPPPSSYHHNPKDLQLSFPDVQFSHLSNLLGTNAGALGNPSFMENKYGIGMIENPRPIDFMMESKLEGIIGSSSSRNFDFFGNSDMGMGVGLGDMNGTQNGLPPNFHGLCSPAFGGMSLDGNNSSNGANYLMDSCQRLMLPYDANEDHNASIDVKPNPKQLLSLEWQDQGCSDAGKDSFGYLNGPGSWTGMMNGYGSSTTNPLV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2232 376 MobiDBLite consensus disorder prediction 150 183 - -
Ssu1g2232 376 Pfam Dof domain, zinc finger 96 153 IPR003851 GO:0003677|GO:0006355
Ssu1g2232 376 MobiDBLite consensus disorder prediction 31 51 - -
Ssu1g2232 376 ProSitePatterns Zinc finger Dof-type signature. 101 137 IPR003851 GO:0003677|GO:0006355
Ssu1g2232 376 MobiDBLite consensus disorder prediction 35 51 - -
Ssu1g2232 376 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 54 370 IPR045174 GO:0003700|GO:0006355
Ssu1g2232 376 PANTHER - 54 370 - -
Ssu1g2232 376 ProSiteProfiles Zinc finger Dof-type profile. 99 153 IPR003851 GO:0003677|GO:0006355
Ssu1g2232 376 MobiDBLite consensus disorder prediction 60 79 - -
Ssu1g2232 376 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2232 Ssu-Chr1 63396442 63397647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2232 89 239 C2C2-Dof Transcription Factor Family AT5G62940 51.462 7.18e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu1g2232 zf-Dof 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2232 - - gmx:100806697 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1375 6 22645051 22646674 Ssu1g2232 1 63396442 63397647 PCT