Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2100 ATGCACGAAACTAAGGACCCTGCAATTAAGCTCTTCGGCCAGAAGATTTCCTTCCCCGGAGAAGCCGACGCTTCGGCCATTGCTACCGGCGAAACTGTCTCGCCGCCGGCGATGGATGTAGACAAAGAGGAAGACTTTATTGAGTCAGAGgctgaagaagaaaaagacaagGACCCTCGAGCTGAAAAAGTTAGTGAGAAAACGAAAGAAGCTGATCCTCCTCCAAATGCTGCAGACTCAAAGAAGACCCCAGAGGGCATTCAGAACCCAAGGACACCTTCCATAGAAGAAGAAACTGCAAAGGCAAAAACCGGCAAGTCAGAGAACGATCAAACTGacccaaccaacaacaacaacaacaacaaaactctGAAAAAACCAGACAAAATTCTCCCGTGTCCACGCTGCAACAGCATGGACACCAAGTTCTGTTACTACAACAACTACAACGTCAACCAGCCGCGTTACTTCTGCAAAGCGTGCCAAAGGTACTGGACCGCGGGCGGCACCATGCGGAACGTGCCGGTGGGTGCCGGgagaagaaagaacaagaacacgGCCTCGCACTACCGCCACATCACAATCTCCGAAGCTCTTCAAGCTGCCAGAATTGACGCCCCGAACGGGACTCACCTCCCAGCCTTGAAACCCAACGGGAGAGTCCTCAGCTTCGGCCTCGACCCTCCAATTTGTGACTCCATGGCGTCCGTCCTCAACCTCGCGGACAAGAAGACGAGAAACGGGCTTCACGCCGCCGAGGATCGAAGAAGCAAAGAGAACAACGGCGACGACTGCTCGAGTGCGTCCTCCATTACGGTCTCTAATGAGGAGAGTGGGAAAAGCACGTCCCAAGAATCGTTAGTGGCGTCGAACAACAACGGTTTCATTCCTCATGTTCCGTGCATTTCCACTCTTCCCTGGCCTTATCCTTGGAACCCTGCGGTTCCCTCAGCGCCTGCTTTGTGCCCTCCGGGGTTTCCCATGTCATTCTACCCTGCTGCATTTTGGAACATTCCGTGGTTCCCCTCGCACTCACACCATTCTCCGACTCTTGGGAAGCACTCTAGGGACGATGATGAGGCCAAGCAAGACCATTTGCACGAGGAGGAGCCGTCCAGGCAGAGAAACGGGTCTGTTTTGGTCCCCAAAACTCTGAGAATTGATGACCCCAGTGAGGCTGCAAAGAGTTCTATATGGGCAACTTTGGGGATCAAGAATGAGTGTGTCGGTCGGGGAGGCATGTTCAAGGGGTTCCAATCAAAGAAAGATGAGAAAGACCATGTTGTTGAAACCTCTCCTGTGTTGAGGGCTAACCCTGCAGCGTTGTCTAGATCCCTTAATTTTCATGAGAACTCTTGA 1359 0.4996 MHETKDPAIKLFGQKISFPGEADASAIATGETVSPPAMDVDKEEDFIESEAEEEKDKDPRAEKVSEKTKEADPPPNAADSKKTPEGIQNPRTPSIEEETAKAKTGKSENDQTDPTNNNNNNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNTASHYRHITISEALQAARIDAPNGTHLPALKPNGRVLSFGLDPPICDSMASVLNLADKKTRNGLHAAEDRRSKENNGDDCSSASSITVSNEESGKSTSQESLVASNNNGFIPHVPCISTLPWPYPWNPAVPSAPALCPPGFPMSFYPAAFWNIPWFPSHSHHSPTLGKHSRDDDEAKQDHLHEEEPSRQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVGRGGMFKGFQSKKDEKDHVVETSPVLRANPAALSRSLNFHENS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2100 452 MobiDBLite consensus disorder prediction 249 286 - -
Ssu1g2100 452 PANTHER CYCLIC DOF FACTOR 2 1 451 IPR045174 GO:0003700|GO:0006355
Ssu1g2100 452 MobiDBLite consensus disorder prediction 53 76 - -
Ssu1g2100 452 PANTHER CYCLIC DOF FACTOR 1 1 451 - -
Ssu1g2100 452 MobiDBLite consensus disorder prediction 350 374 - -
Ssu1g2100 452 ProSitePatterns Zinc finger Dof-type signature. 133 169 IPR003851 GO:0003677|GO:0006355
Ssu1g2100 452 MobiDBLite consensus disorder prediction 346 380 - -
Ssu1g2100 452 Pfam Dof domain, zinc finger 128 185 IPR003851 GO:0003677|GO:0006355
Ssu1g2100 452 ProSiteProfiles Zinc finger Dof-type profile. 131 185 IPR003851 GO:0003677|GO:0006355
Ssu1g2100 452 MobiDBLite consensus disorder prediction 263 286 - -
Ssu1g2100 452 MobiDBLite consensus disorder prediction 1 130 - -
Ssu1g2100 452 MobiDBLite consensus disorder prediction 109 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2100 Ssu-Chr1 59841820 59844407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2100 1 450 C2C2-Dof Transcription Factor Family AT3G47500 49.896 8.01e-127 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu1g2100 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2100 - - gsj:114409713 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2100 1 59841820 59844407 Ssu6g1253 6 20363819 20366571 ECH
Ssu2g1585 2 63635298 63638680 Ssu1g2100 1 59841820 59844407 ECH
Ssu1g2100 1 59841820 59844407 Ssu1g2100 1 59841820 59844407 ECH