Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1999 ATGCAGGAAATTCATTCCATCGGCGGCGGAAGGTTCTTCGGAGGCGGCGGCGGCGACCGGAGGTTGAGGCCGCACCACCAGCAGCCGCTAAAGTGCCCTCGCTGTGACTCACTGAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCGCGCCATTTCTGCAAGAACTGCCGCCGGTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGGAAATCAAAGCGCTCCAACAAGCCCAAAACCACCGCCACCAACAGCAACAATAACAACCCTTCCTCTTCCTCGGAGGCCGCTCCGGCCACCGCGTCAACAGCACCGCCACCAGCGCCGCCGGAGCCAGAGCGTAACTCTAACTCCCACTCCAGCAGCGAGAGCTCCACCCTAACCGTCGCCGCCACGGAGGCGATGTCGGCACCGACATCAAACGCTGCGTCGAACAACAGTTTCTTGTTCGACAACGTTCGCGAGTCGAAGTTCTTCGCTAACGCTAACCCCTCTTTGGAGCATGTTAGTGGTAGCTTTTTCTCTGAGATAGGGAGCTTCTCCAGCCTCATCAATTCAAATAACGAAGCATTGGGGTTTGGGTTTgggaatattaataataacaataataatggtaTCAACATCCTCGATGCGACGTCGTTTCGGTTCGGCGTTGCTCACCCGCGCGGGAATGATCAGGTGCATGTGGCAGCAGGTGGTGGCCAAGGTCAGTGGCAGAATCATCAGGAGTTCGCCACGGCGTCGTTTCTCAATCACACGGTGCCGCTTGAGTTTTCTTCGCTGCAGCATAAGACCGGGCATGGAGGGTTTGGATCGTTGGATTGGCAACCCGGTTCGGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCAACCGTACTGGACCCACACTCATTGGTCTGATCAAGATAATTCTAGTCTCTTTCATCTTCCCTGA 969 0.548 MQEIHSIGGGRFFGGGGGDRRLRPHHQQPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKTTATNSNNNNPSSSSEAAPATASTAPPPAPPEPERNSNSHSSSESSTLTVAATEAMSAPTSNAASNNSFLFDNVRESKFFANANPSLEHVSGSFFSEIGSFSSLINSNNEALGFGFGNINNNNNNGINILDATSFRFGVAHPRGNDQVHVAAGGGQGQWQNHQEFATASFLNHTVPLEFSSLQHKTGHGGFGSLDWQPGSDQGLFDLPNTVDQPYWTHTHWSDQDNSSLFHLP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1999 322 MobiDBLite consensus disorder prediction 74 154 - -
Ssu1g1999 322 MobiDBLite consensus disorder prediction 1 30 - -
Ssu1g1999 322 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Ssu1g1999 322 PANTHER DOF ZINC FINGER PROTEIN 4 15 309 - -
Ssu1g1999 322 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Ssu1g1999 322 MobiDBLite consensus disorder prediction 88 110 - -
Ssu1g1999 322 MobiDBLite consensus disorder prediction 124 154 - -
Ssu1g1999 322 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 309 IPR045174 GO:0003700|GO:0006355
Ssu1g1999 322 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1999 Ssu-Chr1 56635719 56636687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1999 19 322 C2C2-Dof Transcription Factor Family AT5G60850 38.291 2.43e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu1g1999 zf-Dof 4.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1999 - - gmx:778116 392.119