Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1578 ATGATTCTCCtccccttcttttcttttcccattTCGGGTTGGGTTGAGTTCGTTTGGGAATCCACAATCGAAGGGAGAATGTCGGTGAATCTGACGGCAAACGCGATTCCGGCGATAATTGGCGGCGACGTGAACGCGAAACCGCTGGTTCAGGTTCTGGACGTGGCGTCAATCTCCAACAGCAATAACTCGCAGCAGCAGAGATACCGTCTTCTGCTTTCCGACGCCGTTTTTTCTCACCACGCGATGCTCGCCACTCAACTCAACGACCGAGTCCAAACCGGCCGAGTTCAGAAGGGTTCGGTTGTTCAGCTTCTCGATTACATATGCACTCCTCTCAAGAACCgcaaGATTATTGTGGTTCTAAACATGGAAACTATAATACCTGATTGTGAGATCATTGGGAATCCGAAGCCATATATGGATTCTGATTTACCAACTATGAGAGCTGTAGCTGATAACACTATAGAGAATTTGCCCAGGAGTAGCAATAATAATTCTGCTGCTCAAAATGCAAGTCGTAAAAATGCGCAGAATTTCAGGCCAACAATTCAACCTCCATACCAACCGCCTCCAGTTTACAAAGGCCGTGgggcaattttgaaaaatgaggCACCAGCACGCATCATTCCTATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCCATCAAGGCAAGGGTAACCGCTAAAGGGGATCTACGCCGCTATAATAATGCCCGCGGTGATGGGAAAGTCTTCTCGTTCGATCTCCTTGATTCTGATGGAGGTGAAATACGAGTAACATGCTTTAATGCTGTTGTTGATCGCTTCTATAATGTAATTGAGGTTGGTAAAGTTTACATGATATCCAAAGGTAGCTTGAAACCTGCTCAGAAGAATTTCAACCATTTGAAGAATGAAtgggaaatttttttggaatcaaCTTCAACGGTTGAGCTTTACCCGGATGAGGATGATTCTATACCTAGACAGCAGTTCTCCTTCAGGCCTATCAGTGACATTGAGAATGTTGACAATAACTCCATCCTTGATGTTATTGGGGTAGTGACATCTGTGAATCCTTCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCAGAGAAGAATTTTGAGTCTAAAAGACAGTTCTGGCAGGAGTGTTGAACTTACACTGTGGGGTGAATTCTGCAACAGAGAAGGACAAATGCTGCAAGAGATGGTGGATGCTGGATTTTTCCCAATTTTGGCAGTCAAAGCTGGGAAGGTGAATGACTTTAGTGGAAAGTCTATAGGCTCTATTTCTACCACACAGCTTTTCATAAATCCTGATTTCCCTGAGGCTCATAGCTTAAGAGACTGGTTTGATCAAGTAGGAAAAGATTCTGCTTCCCTATCCATTTCTAGGGACATTACTCCTGGAGGACTGAAGAATGAGGTACGCAAAACTGTGTCTCAAATCAAGGATGAAGGTCTGGGGCGGTCAGACAAGCCGGACTGGATAACAGTAAGGGCAACCATATCATTCATCAAGACCGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACAGTGCAATAAGAAAGTGACTAGGTCAGGAAACACAAGATGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAGTGTGATTACCGATACCTTCTCCAGGCTCAAATTCTGGATGACACTGGATTAACTTGGGTAACTGCTTTCCAGGAAGCAGGGGAAGAGATTATGAAGTACTCTGCAAAGGAACTGTACTTGTTGAAATGTGAACAGAAGGATGATGAGAAGTTTGGTGAAATAATCAAGAGCAGACTCTTCAACCAGTTTATGTTTAAGCTGAAAATCAAAGAGGAATTATATAGCGATGAACAGAAGGTGAAGATTACTGTAGTCAAGGCAGATAAGGTGAATTATTCTTCAGAGAGTAGATACATGCTTGATTTGATTTCCAAGTTTTGTAGGCAGTAA 1968 0.4217 MILLPFFSFPISGWVEFVWESTIEGRMSVNLTANAIPAIIGGDVNAKPLVQVLDVASISNSNNSQQQRYRLLLSDAVFSHHAMLATQLNDRVQTGRVQKGSVVQLLDYICTPLKNRKIIVVLNMETIIPDCEIIGNPKPYMDSDLPTMRAVADNTIENLPRSSNNNSAAQNASRKNAQNFRPTIQPPYQPPPVYKGRGAILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNVIEVGKVYMISKGSLKPAQKNFNHLKNEWEIFLESTSTVELYPDEDDSIPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDSSGRSVELTLWGEFCNREGQMLQEMVDAGFFPILAVKAGKVNDFSGKSIGSISTTQLFINPDFPEAHSLRDWFDQVGKDSASLSISRDITPGGLKNEVRKTVSQIKDEGLGRSDKPDWITVRATISFIKTDTFCYTACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEECDYRYLLQAQILDDTGLTWVTAFQEAGEEIMKYSAKELYLLKCEQKDDEKFGEIIKSRLFNQFMFKLKIKEELYSDEQKVKITVVKADKVNYSSESRYMLDLISKFCRQ 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1578 655 Gene3D - 463 653 IPR012340 -
Ssu1g1578 655 Pfam Replication protein A OB domain 332 436 IPR031657 -
Ssu1g1578 655 Pfam Replication factor-A protein 1, N-terminal domain 31 127 IPR007199 GO:0003677|GO:0005634|GO:0006260
Ssu1g1578 655 CDD RPA1_DBD_B 343 450 - -
Ssu1g1578 655 Gene3D - 29 141 IPR012340 -
Ssu1g1578 655 MobiDBLite consensus disorder prediction 158 183 - -
Ssu1g1578 655 MobiDBLite consensus disorder prediction 158 188 - -
Ssu1g1578 655 SUPERFAMILY Nucleic acid-binding proteins 326 453 IPR012340 -
Ssu1g1578 655 SUPERFAMILY Nucleic acid-binding proteins 475 652 IPR012340 -
Ssu1g1578 655 Pfam Replication factor-A C terminal domain 494 644 IPR013955 -
Ssu1g1578 655 SUPERFAMILY Nucleic acid-binding proteins 27 136 IPR012340 -
Ssu1g1578 655 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 28 649 - -
Ssu1g1578 655 CDD RPA1N 35 128 IPR007199 GO:0003677|GO:0005634|GO:0006260
Ssu1g1578 655 Pfam OB-fold nucleic acid binding domain 223 306 IPR004365 GO:0003676
Ssu1g1578 655 Gene3D - 208 317 IPR012340 -
Ssu1g1578 655 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 30 651 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ssu1g1578 655 SUPERFAMILY Nucleic acid-binding proteins 208 322 IPR012340 -
Ssu1g1578 655 CDD RPA1_DBD_A 211 314 - -
Ssu1g1578 655 CDD RPA1_DBD_C 478 651 IPR013955 -
Ssu1g1578 655 Gene3D - 320 458 IPR012340 -
Ssu1g1578 655 PANTHER REPLICATION FACTOR A 1, RFA1 28 649 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1578 Ssu-Chr1 37325909 37328681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1578 52 651 Core DNA Replication Machinery Family AT2G06510 70.081 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1578 K07466 - gmx:100792409 1121.69