LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g0563	atggCCGAAGAATCTCAAGGGATTAAGCTGTTTGGTGCAATGATTACATTGAGCGGTGGAGAAGTAAACAAGGGGGAAAAGGGAAGCGAAGATGAGAAGGTGGAGAAGACAGCAGAGAAGATAATACCCTGCCCGAGATGCAAGAGCATGGAAACTAAATTCTGCTACTTCAATAACTACAACGTTAATCAGCCAAGGCACTTTTGCAAGAGCTGCCAGAGGTACTGGACGGCTGGTGGGGCCCTCCGAAACGTCGCCGTCGGAGCCGGCCGCCGGAAGGCCAAGCCGCCGTGCCATGGTTCTGGTGACTTCCCGGATGGACGTGTCTATGAAACTTCCGAAGATGACAAGAAGTTTGAAATGGAGCAGGGGTTGCTTTTGGATCAGGGGCACGTTGCCATGCCTCACACTGATTTCCGGCAGATTTTTCCGGCCAAACGGCGGAGGACCACCTCAGCTCAGCATCAAGGTCAATAA	477	0.5178	MAEESQGIKLFGAMITLSGGEVNKGEKGSEDEKVEKTAEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVAVGAGRRKAKPPCHGSGDFPDGRVYETSEDDKKFEMEQGLLLDQGHVAMPHTDFRQIFPAKRRRTTSAQHQGQ	158

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g0563	158	Pfam	Dof domain, zinc finger	40	95	IPR003851	GO:0003677\|GO:0006355
	Ssu1g0563	158	PANTHER	DOF ZINC FINGER PROTEIN DOF1.5-LIKE	4	153	-	-
	Ssu1g0563	158	ProSitePatterns	Zinc finger Dof-type signature.	44	80	IPR003851	GO:0003677\|GO:0006355
	Ssu1g0563	158	ProSiteProfiles	Zinc finger Dof-type profile.	42	96	IPR003851	GO:0003677\|GO:0006355
	Ssu1g0563	158	PANTHER	CYCLIC DOF FACTOR 2	4	153	IPR045174	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g0563	Ssu-Chr1	12655747	12656922	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g0563	3	152	C2C2-Dof Transcription Factor Family	AT2G34140	50.292	6.42e-48	151

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-Dof	Ssu1g0563		zf-Dof	1.9e-31	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g0563	-		-	gmx:100820604	271.937

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu1g0563	1	12655747	12656922	Ssu1g0563	1	12655747	12656922	ECH