Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g0451 ATGTCGGGTAACTGTGAGAAAATAGTAGTCATCCCTCCAACGACCAACCAATGGCCACAGGTAGATGATCACAACAAGGTCTTGATGGGTTCCTCCGGTGGAAGTAACACTAATAAGGTAATGGAAAAACCAGGTCAAGAGCTTCTGCAGCAGCAACAACAAGCCCTCAAGTGCCCTCGTTGTGACTCGTCAAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCTCAGCCCCGACACTTCTGCAAAGCCTGCAAGCGCTATTGGACCAGAGGTGGAACCCTCAGGAACGTTCCCGTTGGTGGAGGGTGCAGAAAAAACAAGCGTCTCAAGCGTCCAATAACAAACTCTTCTTcttctgcttcttcttcttcctcttctgcTCCCACTGCTGCTTCACAACCCCAGATCGACACTGCTTCAACCTCAAACCATATCAACCCTTTGTTTTATGGGTTACCAAGTAGCTCTAGCGATGTGAATCTTCCATTGTTCCCTAGGTTCGGTTCCAGAATCTCCAGTTCCGGGTTTGATCTTCAGCTGAATAATGCCCTTGGATTAGGTTTTTCATCCGGGGTTATGTCCAATGAAGCTAGTGATAATAATAACGGTTATAGAAATGGGTTTGTTTCAAGTAATACGCTCCTTTCAAGTTATAATTCCATCTTTGGTTCTTCTTCAACTTCTACATCCACTACTCCTGCTATGTCTACTTTGTTGAGCTCTAATCTGCTACAACAGAAGTTCACCAGTGGTGGATTGAAAGATGGTGCTGATAGCAACACTTTCCAGCAGGGCTTAGGCTTAACCCCACTAGAGAAGCTGCAAATGGGAAGTCATAACAGTGAGGCAGGGATGGTGGCTTTAAAAGATGTGAAAGTAGAATTAGGACATAGCAACAGGTTGGAGTGGAATGGTGCTTGCCAAAACCAGATCCAGCATGTGGGCTTGTACGATCCCTCGCTTTATTGGAATAATACAGCAACAGCTATATACTTCACATTGAAAACTATGAGCACCTATTTTACACTGAAAACAAATGAGCATGCTGAAATGaccaccattgtcactacctccaccaccaccactattgccaCCATCATCGTTGCCGCTagaggtggtgatggtggtggcgacaacgaCAATGGctacaatgatggtggtggcaatggtggcgACCGTAATCGCGATGGTGATAGTAACAACGGTGATGGTAGCAGCGATGATGACAGCGGTGATGGTAACGGCTGTAAGGGTAAcgacgatagtggtggtggtagcagtggTGAGCCTAGCAGCAATAGTGGTGACGAAACAACGGTAGAGGCAATGGTGATGATAACAATAGTAGTGGTGGAGGCGGCAACAATGGTAGTCTTATTATAA 1389 0.401 MSGNCEKIVVIPPTTNQWPQVDDHNKVLMGSSGGSNTNKVMEKPGQELLQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPITNSSSSASSSSSSAPTAASQPQIDTASTSNHINPLFYGLPSSSSDVNLPLFPRFGSRISSSGFDLQLNNALGLGFSSGVMSNEASDNNNGYRNGFVSSNTLLSSYNSIFGSSSTSTSTTPAMSTLLSSNLLQQKFTSGGLKDGADSNTFQQGLGLTPLEKLQMGSHNSEAGMVALKDVKVELGHSNRLEWNGACQNQIQHVGLYDPSLYWNNTATAIYFTLKTMSTYFTLKTNEHAEMTTIVTTSTTTTIATIIVAARGGDGGGDNDNGYNDGGGNGGDRNRDGDSNNGDGSSDDDSGDGNGCKGNDDSGGGSSGEPSSNSGDETTVEAMVMITIVVVEAATMVVLL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g0451 462 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
Ssu1g0451 462 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Ssu1g0451 462 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Ssu1g0451 462 MobiDBLite consensus disorder prediction 101 140 - -
Ssu1g0451 462 MobiDBLite consensus disorder prediction 114 140 - -
Ssu1g0451 462 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 334 IPR045174 GO:0003700|GO:0006355
Ssu1g0451 462 MobiDBLite consensus disorder prediction 422 440 - -
Ssu1g0451 462 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 3 334 - -
Ssu1g0451 462 MobiDBLite consensus disorder prediction 372 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g0451 Ssu-Chr1 10388984 10392619 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g0451 1 169 C2C2-Dof Transcription Factor Family AT1G28310 52.542 1.61e-42 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ssu1g0451 zf-Dof 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g0451 - - ccaj:109814566 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0451 1 10388984 10392619 Ssu1g0451 1 10388984 10392619 ECH
Ssu5g1673 5 51093171 51094416 Ssu1g0451 1 10388984 10392619 PCT